DY305444

Overview
NameDY305444
Unique NameDY305444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1249
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_PROMM (Protein thf1 OS=Prochlorococcus marinus (strain MIT 9313) GN=thf1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.373e-16
Identity = 54/188 (28.72%), Postives = 90/188 (47.87%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGE-VEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAV-------LNVNKRSVDRDLDVYRN 555
            T+A++K  F   +   IPS+Y     EL+V+ HL+ +++ +  D +FA+G   V+D    GY  +   + +F A   +   DP   R  AQ+  E  RG     +  +  ++G+     L       +G   F YSR  AVGL  LL  A   E +  EKL  +       +  +K  V++DL++Y++
Sbjct:    6 TIADSKRAFNHDFPHVIPSLYRRTTDELLVELHLLSHQKHFHPDALFAIGLSQVFDVFTSGYRPEAHVKTLFDALCRSCGFDPNALRKQAQQTLESVRGHDLEEVQGWIQQQGKGAPEALAKALRNTAGSTTFHYSRLMAVGLLSLLASAQGDESSDPEKLSQIAHELSESVGFSKARVEKDLNLYKS 193          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_SYNSC (Protein thf1 OS=Synechococcus sp. (strain CC9605) GN=thf1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.829e-11
Identity = 51/186 (27.42%), Postives = 91/186 (48.92%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANA------TEPTVLE--KLCAVLNVNKRSVDRDLDVY 549
            T+A++K  F + +   I  +Y  +  EL+V+ HL+ ++  ++ + +F++G  TV+D  ++GY  +   +A+F+A  ++   D  + R     L E A+G+   SL ++ S     EG                YSR  AVGL  LL+ A A      TE  V +  +L   L +    V++DL ++
Sbjct:    6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSRFEANELFSVGLCTVFDTFIKGYRPEAQTDALFRALCSSNGFDAAKLRKTYASLVEQAKGKDPESLKDWLSSHALKEG--------------SHYSRLMAVGLMSLLKAAAADATDSDTEAIVKQSKELAEGLGLPTDRVEKDLTLF 177          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_SYNPX (Protein thf1 OS=Synechococcus sp. (strain WH8102) GN=thf1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.389e-11
Identity = 50/183 (27.32%), Postives = 89/183 (48.63%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLEL-ANATEPTVLE----KLCAVLNVNKRSVDRDLDVY 549
            T+A++K  F + +   I  +Y  +  EL+V+ HL+ ++ T+Q + +FA+G  TV++R  +GY   E   A+  A  ++   D EQ +  AQ   + A G +  +   +  ++   +G                YSR  AVGL  LLE  ++ ++ + L     KL   L +    V++DL V+
Sbjct:    6 TIADSKRAFHQAFPHVIAPLYRRIADELLVELHLLSHQATFQANSLFAVGLKTVFERFTQGYRPMEHPAALLSALCSSNGFDDEQLKQAAQHCLQDAEGHSDDAFQSWLKEQSLSDGA--------------HYSRLMAVGLLALLEASSDESDASSLRQRAVKLSVDLGLPAERVEKDLTVF 174          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_SYNS9 (Protein thf1 OS=Synechococcus sp. (strain CC9902) GN=thf1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.322e-11
Identity = 46/186 (24.73%), Postives = 94/186 (50.54%), Query Frame = 1
Query:   16 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELA--NATEPTVLE------KLCAVLNVNKRSVDRDLDVY 549
            T+A++K  F + +   I  +Y  +  EL+V+ HL+ ++ +++  P+FA+G  TV+D    GY  +E    +  A  ++   D   +R ++++  + A+ ++             V+ + + +A +  G+G+  YSR  A+G+ RL E A  +A +P   +      +L   LN     V++DL ++
Sbjct:    6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSSFKTTPLFAVGLCTVFDTFSAGYRPEEHITGLLDALCSSNGYDANTFRKESKRCIDAAKTES-------------VDAMDSHLAGQKLGEGS-HYSRLMAIGVLRLFEEAKGDADQPDEADLRKRCKELSTALNFPAERVEKDLSLF 177          
BLAST of DY305444 vs. ExPASy Swiss-Prot
Match: THF1_PROMT (Protein thf1 OS=Prochlorococcus marinus (strain NATL2A) GN=thf1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.322e-11
Identity = 48/190 (25.26%), Postives = 89/190 (46.84%), Query Frame = 1
Query:    7 VPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRS-------VDRDLDVYRN 555
            V  T++++K +F K +   IP+IY  +  EL+V+ HL+ +++ ++ D +F+ G   V+ +   GY   E    +F A       +P +    +++L   A+  T   L  F SK        ND       KG   YSR  A+G+++L+      +    E L   +N   +S       V++D+ +Y++
Sbjct:    3 VRATISDSKSDFHKEFPYVIPAIYRKLADELLVELHLLSHQKNFKKDSIFSTGLKEVFSKFTSGYKPSEHATKLFDAICNCNGFNPTEINNSSEQLVSNAKSFTKEDLNSFLSKTN------ND------NKGYDYYSRINAIGIYKLVSEMPLFKEVKEEDLNKEINDISKSLGYQYSRVEKDISMYKS 180          
The following BLAST results are available for this feature:
BLAST of DY305444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
THF1_PROMM9.373e-1628.72Protein thf1 OS=Prochlorococcus marinus (strain MI... [more]
THF1_SYNSC1.829e-1127.42Protein thf1 OS=Synechococcus sp. (strain CC9605) ... [more]
THF1_SYNPX2.389e-1127.32Protein thf1 OS=Synechococcus sp. (strain WH8102) ... [more]
THF1_SYNS95.322e-1124.73Protein thf1 OS=Synechococcus sp. (strain CC9902) ... [more]
THF1_PROMT5.322e-1125.26Protein thf1 OS=Prochlorococcus marinus (strain NA... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AA05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305444 ID=DY305444; Name=DY305444; organism=Citrus sinensis; type=EST; length=1249bp
GCTGATGTGCCTCCTACTGTGGCCGAGACAAAGATGAATTTTCTGAAGTT
ATATAAGAGACCAATCCCCAGTATTTACAACACCGTTCTACAGGAATTGA
TTGTCCAACAACATTTGATGAGGTACAAAAGAACATACCAATATGACCCT
GTGTTTGCCCTTGGATTTGTCACTGTATATGATCGACTCATGGAAGGCTA
TCCAAGTGATGAGGATCGAGAAGCCATCTTCCAAGCATACATTACGGCAC
TGAAGGAGGATCCAGAGCAATACAGAATTGATGCACAAAAGTTAGAGGAA
TGGGCTCGGGGTCAGACTGCCAGTTCATTAGTTGAGTTCCCATCTAAAGA
AGGAGAAGTTGAGGGGATATTGAACGACATTGCAGAAAGAGCCAGCGGCA
AGGGGAATTTCAGCTACAGCCGTTTCTTTGCTGTTGGGCTGTTTCGCCTT
CTTGAACTGGCAAATGCAACTGAACCCACAGTGTTAGAAAAGCTTTGTGC
AGTCTTAAATGTTAACAAAAGAAGTGTGGATCGTGACCTTGATGTATATC
GCAATTTATTATCCAAGCTGCTTCAAGCTAAAGAGTTGCTGAAGGAGTAT
GTGGATAGGGAAAAGAAGAAGAGAGAAGAAAGGACAGAACCGCACAAGGC
TAATGAAGCCATTAAAAAATGTCTGGGAGAATACCTATATTCCCATCAGT
AATTCCACCTGTGAACGAAACCGGCAATGCTAATCATCTCCTGTGAAGTT
TTCATCCCGTTTTTGTCTGCTTTGCGGTAGAGTTGGAACCCTCATGCCTC
ACGTACCATGTTTTAACCCTACAGGCTTGCCTGTTCCAATGACTTGTTTT
ATAACCGTGATTTGCAAACGTCCAGGCTTCACCAAGCTAATACCCAAATT
TCTTCTGGTTCAAAAAAAAAAAACAAAAAATAACTAGCGGGGGGGCCCGG
TTCCCACTTCCCCATACCATGTTCCTAAAACAATTCCACTGGCCCCGCTT
TTTTCACCTCCGTGACGGGGAAACCCAAGGGGATACCCCATTATATCCCC
GTTGGGCCCACCTCCACTTCCTCACAACGGGAAAGTATCCAGAAAGCGCC
CCCACCCTTTCCCCTTACCTAAACTCTCGAAACCCCAAAGGGGAAATTGG
GAGAATTACAGACCACTAAATTTTTTGGTTACAATTTTCCCGTTGTGTAT
ATTTTTTTTTTGTATTGACCGCCCCGCTCAATGTTTTTTTAACTCAAAA
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