EY702515

Overview
NameEY702515
Unique NameEY702515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.885e-18
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   43 KKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKP 375
            +++ETLSYLPPL+D  + K++ Y++  G+IP +EF                     YWT+WKLP++G   + +VL EV   + +YP  ++R++GFDN    Q +SFI  KP
Sbjct:    8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFN------------EVSEPTELYWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKP 106          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.498e-17
Identity = 43/106 (40.57%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   46 KFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFI 363
            KFETLSYLP L+ + + +++ Y++  GW P +E            H  P    G YW MWKLPM+G TD   +LKE     K  PH+ VRI+G+DN    Q  S +
Sbjct:   18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQGTSLV 111          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.472e-16
Identity = 36/111 (32.43%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   43 KKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKP 375
            +KFET SYLPPL+D+ + +++ Y +  G+ P +EF               G  +   WT+WKLP++G     +VL E+   ++++P++++R++ FD+   VQ + F+  KP
Sbjct:    7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFSFT------------GKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 105          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4)

HSP 1 Score: 83.9593 bits (206), Expect = 1.227e-15
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   43 KKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGA 339
            +KFET SYLP +  + + K++ Y++  GW P +E            H  P      YW MWKLPM+G TD   +LKE     K +P++ VR+IGFDN A
Sbjct:   17 RKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYA 103          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.093e-15
Identity = 42/112 (37.50%), Postives = 57/112 (50.89%), Query Frame = 1
Query:   43 KKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKPP 378
            +KFET SYLP L  E + K++ Y++  GW P +E            H  P      YW MWKLPM+G TD   +L E     K +P   VR+IG+DN A  Q  + +  + P
Sbjct:   17 RKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRLIGYDNYAQSQGTAMVIFRGP 116          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.954e-15
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 1
Query:   43 KKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQ 348
            +KFET SYLP ++   + K++ YL+  GW P +E            H  P +    YW MWKLPM+G TD  ++L E     K  P++ VR++G+DN A  Q
Sbjct:   17 RKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQ 106          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.954e-15
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 1
Query:   43 KKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKP 375
            K+FET SYLP +S E + K+I Y++  GW P +E            H  P      YW MWKLPM+G TD  +++ E+   ++  P+  +++IG+DN    Q  + +  +P
Sbjct:   24 KRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKLIGYDNIRQTQGTAMLVYRP 122          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.022e-14
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 1
Query:   43 KKFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQ 348
            +K ET SYLP ++ + +  ++ Y+I  GW P +E            H  P      YW MWKLPM+G TDA  VL EV    K  P++ VR+IG+DN A  Q
Sbjct:   17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQ 106          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.947e-14
Identity = 39/110 (35.45%), Postives = 60/110 (54.55%), Query Frame = 1
Query:   46 KFETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISFIAAKP 375
            ++ET SYLPPL+ E +L++I Y++  GW   LE            H+ P      YW MWK+P +G  D   +L E+   ++ YP   VR++G+D  A  +  SF+A +P
Sbjct:   15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLAHRP 112          
BLAST of EY702515 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.794e-14
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 1
Query:   52 ETLSYLPPLSDEALLKEIHYLIRAGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNGAAVQCISF 360
            ET S+LP  + + +  +I Y+I  GW P LE            H++P      YW MWKLPM+G  D   VL E+ + +  YP+  +R+IG+DN    Q  +F
Sbjct:   15 ETFSFLPEFTADEIYDQIVYIINQGWTPALE------------HEAPEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNF 105          
The following BLAST results are available for this feature:
BLAST of EY702515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RBS_ANASP5.885e-1837.84Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS2_THIFE8.498e-1740.57Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_CYAPA2.472e-1632.43Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS1_CHRVI1.227e-1540.40Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_ALVHS2.093e-1537.50Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_THIDA7.954e-1538.24Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS_PSEHY7.954e-1534.23Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS1_HYDMR3.022e-1440.20Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS2_CHRVI3.947e-1435.45Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS2_HYDMR8.794e-1435.92Ribulose bisphosphate carboxylase small chain 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-H06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702515 ID=EY702515; Name=EY702515; organism=Citrus sinensis; type=EST; length=861bp
CGGAAAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTT
CGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGG
AAATCCATTACCTTATCCGGGCCGGGTGGATTCCCTGCTTGGAATTCGAG
TTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTA
CGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAG
ATGCAACCCAGGTTCTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCA
CATTCATTCGTCCGAATTATCGGATTTGACAACGGGGCGGCGGTGCAGTG
CATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAA
TTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACCCC
CATAATGATCATTCGACCAATGGGCGTTCGGTTTGCGTTTAATTTGTACT
TAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGGTTTCTCCCACGCGGG
CCGCGGACGCCGCGGCCCCAGGGTCCAAGGAGCCCCCCTCCGCCCGCCCG
CCCCCGCCGCCCCCTCCCCCACGTCGGCCGCGGCTGGGGGCGCCTGCGGC
CGACACCAGAGGGGGGGGCCCCCGAGAGGCGCCAGGCTTACGCCCCGGGG
GGGGCCGCGCGCGCCCTTCTCGGGGGCCGCCCAACACCGTTCCCGGGGCC
GGGGTTTCACCCTGGGGGGGCGGAAACCCGGGGTTTGCCCTTTTAGGCGT
GGGGAGTTCCCGCTTCGCCGGGGGGGGAATAAAAAAGGCGCCCCTCCGCC
CCCTCCGCTGT
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