EY702511

Overview
NameEY702511
Unique NameEY702511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.957e-28
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 3
Query:  186 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPP 548
            M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL ++    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.957e-28
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 3
Query:  186 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPP 548
            M VW P   K FET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 160          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.957e-28
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 3
Query:  186 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPP 548
            M VW P   K FET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.815e-28
Identity = 66/186 (35.48%), Postives = 99/186 (53.23%), Query Frame = 3
Query:    9 MASSMISSATVATANRASLAQASMVAPFTGLKSSSGFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPP 548
            MA++M++ + +        A    V     + S  GF  T   N +           + M VW P   K FET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R++ FD  RQVQ   F+  +PP
Sbjct:    1 MAAAMMNKSVLLNKQCGKPAAVPKV-----VMSKGGFARTSAVNKN-----------RDMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.815e-28
Identity = 62/149 (41.61%), Postives = 88/149 (59.06%), Query Frame = 3
Query:  123 ATKKTNNDITSIASN-GGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPP 548
            AT K      S AS    + + M VW P   K FET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   21 ATPKVVTSKRSFASTVANKNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.317e-23
Identity = 49/112 (43.75%), Postives = 73/112 (65.18%), Query Frame = 3
Query:  231 SYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKPP 548
            SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   ++    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:    2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 113          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.440e-22
Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = 3
Query:  213 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKP 545
            +++ETLSYLPPLSD+ + ++I Y++R G+IP +EF  +                  YWTMWKLP++  T   +VL EV E + EYP+ ++R++GFDN +Q Q + FI  KP
Sbjct:    8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDSDATTC------------YWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFIVHKP 106          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.363e-20
Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = 3
Query:  213 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKP 545
            K++ETLSYLPPLSD+ + +++ Y++  G+IP +EFE  K      HH          WT+WKLP++  + A +VL EV E + EY   ++R++GFDN +Q Q + FI  KP
Sbjct:    8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEFE--KDPTPELHH----------WTLWKLPLFNASSAQEVLNEVRECRSEYSDCYIRVVGFDNIKQCQTVSFIVYKP 106          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.037e-20
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 3
Query:  213 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKP 545
            +++ETLSYLPPL+D+ + K++ +L+  G+IP +EFE +      E H         +WTMWKLP +G   A +VL EV E + E P+ ++R+IGFDN +Q Q + FI  KP
Sbjct:    8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFEEDP---QPETH---------FWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSFIVHKP 106          
BLAST of EY702511 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  213 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIRFIAAKP 545
            ++FET SYLPPLSD  +  +I Y+I  G+ P +EF           H +P  +   YWTMWKLP++ C    QVL EV E + EY   ++R+ GFDN +Q Q + FI  +P
Sbjct:   10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFN---------EHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFIVHRP 108          
The following BLAST results are available for this feature:
BLAST of EY702511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS7_ACECL3.957e-2844.88Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS2_ACEAT3.957e-2844.88Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_ACEAT3.957e-2844.88Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS5_ACEAT8.815e-2835.48Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACEAT8.815e-2841.61Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_ACECL1.317e-2343.75Ribulose bisphosphate carboxylase small chain 1 (F... [more]
RBS_PROHO9.440e-2242.34Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_SYNP21.363e-2042.34Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNY33.037e-2043.24Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNP63.966e-2042.34Ribulose bisphosphate carboxylase small chain OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-H02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702511 ID=EY702511; Name=EY702511; organism=Citrus sinensis; type=EST; length=902bp
GAAGACCAATGGCTTCCTCAATGATCTCATCGGCCACCGTTGCCACCGCG
AACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCT
CAAGTCTTCTTCTGGTTTCCCAGCAACCAAGAAGACCAACAATGACATTA
CTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCA
CCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTC
CGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGA
TTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCAC
CACAAGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCT
GCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGG
AGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGAC
AACAAGCGTCAAGTGCAGTGCATCAGGTTCATTGCTGCCAAGCCACCAGG
GGGCTAGGGTCCCAATAAAATTGTGGACCACCCATGCAATATTGGTGATT
ATTATTATGTGTAACCCCCATAATGATCATTCCATCAAGGGGGGTCCGGG
TTGGGGTTAAATTTGTACTTAAGGTGCTGGTGCTGCTGCTACAACTTTTT
GCGTTTCCCCCCCACTTTGGGCTGCTTTTTTTTTTTTTAATAAAATCTGA
ATAATGGAACCCTTGGGTCAACTTCATTAAACTGGGCGCCGGAGTTCCAG
TTAATGGAGGGAAATACTGGGATTAAAAAAAAAGTTTATGGTCTTGGCAA
AAAAAAAAAAAAAGGGGGGCGCCTCAAGAAGACCAAGGTATTCACCCGGG
AT
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