EY702505

Overview
NameEY702505
Unique NameEY702505
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 1.416e-62
Identity = 108/150 (72.00%), Postives = 129/150 (86.00%), Query Frame = 1
Query:  145 GCEASSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 594
            GC +S AFPAT+K NND++++ S+GGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:   24 GCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.850e-62
Identity = 107/169 (63.31%), Postives = 137/169 (81.07%), Query Frame = 1
Query:   94 PRTAPALLRAAWSPPSPGCEASSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 600
            P T   + +A    P  G ++++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:    5 PATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.155e-62
Identity = 108/167 (64.67%), Postives = 136/167 (81.44%), Query Frame = 1
Query:   94 PRTAPALLRAAWSPPSPGCEASSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 594
            P T  A+ +A    P  G +A++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ TLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP
Sbjct:    5 PATVAAVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.155e-62
Identity = 107/169 (63.31%), Postives = 137/169 (81.07%), Query Frame = 1
Query:   94 PRTAPALLRAAWSPPSPGCEASSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 600
            P T   + +A    P  G ++++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:    5 PATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.155e-62
Identity = 112/169 (66.27%), Postives = 134/169 (79.29%), Query Frame = 1
Query:  100 TAPALLRAAWSP----PSPGCEASSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 594
            TA A+ RA  +     P   C +S  FPAT+K NN+++++  NGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:    9 TAAAVARAGPAQSSMVPFNACRSSVPFPATRKANNNLSTLPGNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.120e-62
Identity = 110/168 (65.48%), Postives = 138/168 (82.14%), Query Frame = 1
Query:   97 RTAPALLRAAWSPPSPGCEASSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 600
            R APA  +A    P  G +++ AFPATKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:   13 RAAPA--QANMVAPFTGLKSNVAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.381e-62
Identity = 107/169 (63.31%), Postives = 135/169 (79.88%), Query Frame = 1
Query:   94 PRTAPALLRAAWSPPSPGCEASSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 600
            P T  A+ +     P  G +A++AFP TKK N   +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQC+SFIA+KP G
Sbjct:    5 PATVAAVPQTNMVAPFTGLKANAAFPVTKKVNG-FSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 7.028e-62
Identity = 104/161 (64.60%), Postives = 133/161 (82.61%), Query Frame = 1
Query:  118 RAAWSPPSPGCEASSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 600
            +A+   P  G +++  FPATKK N+DITS+ASNGGRVQCMKVWP   +K++ETLSYLPPL+ + L ++++YL+ + W+PCLEFE + G+VYREHH SPGYYDGRYWTMWKLPM+GCTD  QVL E+ E +KEYP++F+RIIGFD+ RQVQC+SFIA KP G
Sbjct:   20 QASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAG 179          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.566e-61
Identity = 107/153 (69.93%), Postives = 128/153 (83.66%), Query Frame = 1
Query:  136 PSPGCEASSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 594
            P  G  +S AFPAT+K N +++++ SNGG+V CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:   25 PFNGLRSSVAFPATRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.556e-61
Identity = 110/166 (66.27%), Postives = 135/166 (81.33%), Query Frame = 1
Query:   97 RTAPALLRAAWSPPSPGCEASSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 594
            R APA  +A+   P  G +++SAFP T+K    ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:   16 RAAPA--QASMVAPFVGLKSASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
The following BLAST results are available for this feature:
BLAST of EY702505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS1_LEMGI1.416e-6272.00Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS3_FLAPR1.850e-6263.31Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS6_FLAPR3.155e-6264.67Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS5_FLAPR3.155e-6263.31Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS3_LEMGI3.155e-6266.27Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS2_FLAPR4.120e-6265.48Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_FLATR5.381e-6263.31Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_SPIOL7.028e-6264.60Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_LEMGI1.566e-6169.93Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS3_FRIAG4.556e-6166.27Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-G06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702505 ID=EY702505; Name=EY702505; organism=Citrus sinensis; type=EST; length=892bp
ATTCCCTCCACCACCCACGCGTCCGCTTGCAAAGTTAGCAGAAGGAGCAA
GTACCAATGGCTTCCTCAATGATCTCATCGGCCACCGTTGTTTCCGCGAA
CCGCGCCAGCCTTGCTCAGGGCAGCATGGTCGCCCCCTTCACCGGGCTGC
GAGGCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTAC
TTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCAC
CAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCC
GATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGAT
TCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACC
ACAAGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTG
CCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGA
GGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACA
ACAAGCGTCAAGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGC
GTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGGTGAT
TATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGG
GTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAACTTTTTT
GGTTTAAACCCNCACCACCAAAAAACGACGAGCCCCAAGCAGACCAACAA
GAGAGAGCGCGGGGGGGGCTGCGGAAGATAACCCACCAACAAGGGGCCCC
CCCAAAAGACAACCTCTACCCCCCGGGGGGGGGCAGAATTTT
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