EY702505

Overview
NameEY702505
Unique NameEY702505
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.995e-32
Identity = 59/125 (47.20%), Postives = 85/125 (68.00%), Query Frame = 1
Query:  238 KVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFE------LEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 594
            KVW P   K++ET SYLPPL+++ + ++++Y+I +GW PCLEF       +      R    S GYYD RYWTMWKLPM+GCTD +QVL+EV   Q  +P+ ++R++ FDN +QVQC+ F+  +P
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.605e-32
Identity = 63/126 (50.00%), Postives = 85/126 (67.46%), Query Frame = 1
Query:  235 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF-ELEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 594
            M VW P   K FET SYLPPLSDE +  +++Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + F+  +P
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.443e-32
Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 1
Query:  367 ELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 597
            ELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.443e-32
Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = 1
Query:  235 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF-ELEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 594
            M VW P   K FET SYLPPL+DE +  +++Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + F+  +P
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.416e-31
Identity = 67/159 (42.14%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  139 SPGCEASSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 597
            S GC   SA P          + A N  R   M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   13 SKGCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.867e-30
Identity = 66/152 (43.42%), Postives = 90/152 (59.21%), Query Frame = 1
Query:  166 FPATKKTNNDITSIASNGGRVQC--MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 597
            FP   K N      ASN    +C  M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.432e-30
Identity = 68/172 (39.53%), Postives = 95/172 (55.23%), Query Frame = 1
Query:  103 APALLRAAWSPPSPGCEASSAFPATKKTNNDITS-IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 597
            A A++         GC  SS+ P          S +A    R   M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:    2 AAAMMNKTIVVSKDGCARSSSIPKVATNKMGFASAVAMKKSRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 171          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.521e-29
Identity = 63/159 (39.62%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  139 SPGCEASSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 597
            S  C   +A P    +     S  +N  R   M VW P   K FET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   13 SKQCTKPAATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.005e-29
Identity = 58/127 (45.67%), Postives = 82/127 (64.57%), Query Frame = 1
Query:  235 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 597
            M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+  + G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY702505 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.338e-28
Identity = 58/127 (45.67%), Postives = 82/127 (64.57%), Query Frame = 1
Query:  235 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 597
            M VW P   K FET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTDA+QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
The following BLAST results are available for this feature:
BLAST of EY702505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS_CHLMO1.995e-3247.20Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_CHLRE2.605e-3250.00Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_SINAL4.443e-3277.92Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS1_CHLRE4.443e-3249.21Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS4_ACECL6.416e-3142.14Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_ACECL1.867e-3043.42Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS5_ACECL5.432e-3039.53Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACEAT3.521e-2939.62Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS6_ACECL6.005e-2945.67Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS3_ACEAT1.338e-2845.67Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-G06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702505 ID=EY702505; Name=EY702505; organism=Citrus sinensis; type=EST; length=892bp
ATTCCCTCCACCACCCACGCGTCCGCTTGCAAAGTTAGCAGAAGGAGCAA
GTACCAATGGCTTCCTCAATGATCTCATCGGCCACCGTTGTTTCCGCGAA
CCGCGCCAGCCTTGCTCAGGGCAGCATGGTCGCCCCCTTCACCGGGCTGC
GAGGCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTAC
TTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCAC
CAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCC
GATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGAT
TCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACC
ACAAGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTG
CCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGA
GGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACA
ACAAGCGTCAAGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGC
GTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGGTGAT
TATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGG
GTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAACTTTTTT
GGTTTAAACCCNCACCACCAAAAAACGACGAGCCCCAAGCAGACCAACAA
GAGAGAGCGCGGGGGGGGCTGCGGAAGATAACCCACCAACAAGGGGCCCC
CCCAAAAGACAACCTCTACCCCCCGGGGGGGGGCAGAATTTT
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