DY257553

Overview
NameDY257553
Unique NameDY257553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1227
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257553 vs. ExPASy Swiss-Prot
Match: MDHC1_ARATH (Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 1.723e-46
Identity = 109/269 (40.52%), Postives = 157/269 (58.36%), Query Frame = 1
Query:    4 DSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI----NGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMP--CRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 792
            D+ FPLL+ V    +  E       A+++G  PR  GMER  ++  N  I+  Q  AL   A+ N KV+VV NP NTNALI  + APSIP KN   LTRLD NRA  Q++ +  V    V N+ IWGNHS++Q PD  +A++       PV+E++KD  WL+  F  T+Q+RG  +IK    SSA S + S  D ++  V  TPEG + S GVY++G+ Y +   +++S P  CR   +GD+ +V+ +  D+  RK++  T +EL  EK
Sbjct:   60 DAAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKHAAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVKNVIIWGNHSSSQYPDVNHAKVQTSSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGS-YSVPSGLIYSFPVTCR---NGDWSIVQGLPIDEVSRKKMDLTAEELKEEK 324          
BLAST of DY257553 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 5.014e-46
Identity = 105/272 (38.60%), Postives = 160/272 (58.82%), Query Frame = 1
Query:    4 DSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIN----GLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAH 807
            D+ FPLL+ V    +  E       A+++G  PR  GMER  ++  N  I+  Q  AL   A+ N KV+VV NP NTNALI  + APSIP +N   LTRLD NRA  Q++ +  V    V N+ IWGNHS+TQ PD  +A +N      PV++++ D  WL   F  T+Q+RG  +IK    SSA S + +  D ++  V  TP+G + S GVY++G+ Y +   +++S P  +  +G++++V+ +  D++ RK++  T +E L E+K +AH
Sbjct:   60 DAAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAANCKVLVVANPANTNALILKEFAPSIPERNISCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSTQYPDVNHATVNTPAGEKPVRQLVSDDAWLNGEFISTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGS-YNVPSGLIYSFPV-TCANGEWKIVQGLSIDEFSRKKLDLTAEE-LTEEKNLAH 328          
BLAST of DY257553 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 5.014e-46
Identity = 109/269 (40.52%), Postives = 156/269 (57.99%), Query Frame = 1
Query:    4 DSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNA----RINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMP--CRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 792
            D+ FPLL+ V    +  E       A+++G  PR  GMER  ++  N  I+  Q  AL   A+ N KV+VV NP NTNALI  + APSIP KN   LTRLD NRA  Q++ +  V    V N+ IWGNHS+TQ PD  +A     +   PV+E++K+ +WL   F  T+Q+RG  +IK    SSA S + S  D ++  V  TPEG + S GVY++G+ Y +   +++S P  CR   +G++ +V+ +  DD  RK++  T +EL  EK
Sbjct:   60 DAAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVKNVIIWGNHSSTQYPDVNHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIKARKLSSALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGS-YNVPAGLIYSFPVTCR---NGEWTIVQGLPIDDASRKKMDLTAEELKEEK 324          
BLAST of DY257553 vs. ExPASy Swiss-Prot
Match: MDHC_BETVU (Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.240e-45
Identity = 105/267 (39.33%), Postives = 151/267 (56.55%), Query Frame = 1
Query:    4 DSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDF----LNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEK 792
            D+ FPLL+ V    +  E  +    A+++G  PR  GMER  ++  N  I+  Q  AL   A+ N KV+VV NP NTNALI  + APSIP KN   LTRLD NRA  Q++ +       V N+ IWGNHS++Q PD     +        V+E++ D  WL   F  T+Q+RG  +IK    SSA S + S  D ++  V  TPEG W S GVY++G+ Y +   I++S P   K DG++++V+ +  D+  R+++  T  EL+ EK
Sbjct:   60 DAAFPLLKGVVATTDVAEACKGVNVAVMVGGFPRKEGMERKDVMPKNVSIYKSQASALEQYAAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNAQVSDVKNVIIWGNHSSSQYPDVNPCTVKTGSGEKAVRELVADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGIIYSFPVTCK-DGEWKIVQGLPIDEVSRQKMDATGAELVEEK 324          
BLAST of DY257553 vs. ExPASy Swiss-Prot
Match: MDH2_RHOFD (Malate dehydrogenase 2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 6.342e-41
Identity = 106/274 (38.69%), Postives = 145/274 (52.92%), Query Frame = 1
Query:    1 EDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS---IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMP----CRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCV 801
            ED  FPLL E+    +P   F D + ALL+ A+PR  G ER  +L  N +IFA QG  +   A+ + KV+VVGNPCNTNA + +K A     IPA+NF AL RLD NRA  QLALK G     V  + +WGNHS T   D     I+G  V  +I +  W  +    T+ KRG  ++   G  + AS + + +D M+     T  G+W + GV ++G  YG+   +VF  P    CR     DY +V  +  D + R  I    +EL AE + V
Sbjct:   59 EDCAFPLLTEIIATDDPVLAFSDTQIALLVSARPRAVGAERLEVLADNAKIFAAQGAVIGRHANPDCKVLVVGNPCNTNACVAMKAAQKFSRIPARNFAALLRLDHNRALAQLALKTGRPVGGVKRLAVWGNHSPTVYADDRFTTIDGDSVPAIIDNIAWHHDTLVRTVDKRGEAILAARGLYAEASAASAAIDQMRDWWLGT-RGEWTTMGVVSDG-AYGVPAGLVFGFPVITDCR-----DYRIVPGLAVDAFARGMIDVNVRELTAELEIV 325          
BLAST of DY257553 vs. ExPASy Swiss-Prot
Match: MDH1B_BRAFL (Putative malate dehydrogenase 1B OS=Branchiostoma floridae GN=MDH1B PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.981e-26
Identity = 79/282 (28.01%), Postives = 138/282 (48.94%), Query Frame = 1
Query:    4 DSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGN-PCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING------------LPVKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHP 810
            D  FP L+E+ +  +    F++A  A+++    +G   +  G ++     +    +A+N  AS++++V+V G  P N+   I + + PSIP +N  A+ ++ E +AK  LA +  V    V ++ +WGN   T   D   AR++G              V E++ D+KWLE  F E +Q R   +      S+  S + +I   +      +PEG  FS  V + G  Y I E +VFS P      G +E+V+D+  ++ +R  ++    +L+ EK  + HP
Sbjct:  185 DLSFPFLKEISVTTDLPTAFQNAHIAIVLDDFDQGGKEDAIGDMETKVSFYKRVAEAINQTASKDIRVLVAGTGPLNSLVSILIDHTPSIPRQNIAAVAQVKERQAKSLLAKRLTVNSAGVCDVIVWGNVGGTTYTDVSRARVHGYDGAIWGPPSYSCSVSEMVHDNKWLEGEFLEQLQSRSHTIQDSLQHSADLSMAAAISSTLSYWWNGSPEGQLFSLAVCSEGF-YNIPEGVVFSFPVMFH-KGSWEVVQDIDMNEDMRVMLSSITAQLVEEKDLLLHP 464          
BLAST of DY257553 vs. ExPASy Swiss-Prot
Match: MDH1B_DANRE (Putative malate dehydrogenase 1B OS=Danio rerio GN=mdh1b PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.225e-19
Identity = 74/249 (29.72%), Postives = 119/249 (47.79%), Query Frame = 1
Query:   97 KPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNP-CNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARI----------NGLP--VKEVIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVA 804
            +P G   +     D   + F   G+ +   A ++V+V+V G+   N    + ++NAPSI ++NF A+T   E  A+ QLA K  V    ++N+ +WGN S +   D   A++          +G    V E+I D KWL+  F   + K    +  K  +++A ST+ +I+  +K+        + FS GV + G  +GI   +VFSMP  S  DG + +  DV   D LR  +     EL  E+   A
Sbjct:  194 EPAGEYNDEQNDKDQVAEHFHRYGQLIETNAQKDVRVLVAGDFFINMKCSLLIENAPSIDSRNFVAMTTQLEYEARTQLAQKLSVKTSDITNVIVWGNISGSFHIDLQRAKVFRYDGAIRGPDGFSQHVMEMIYDWKWLKTDFRSLLHKHRATISSKTNKATAISTTNAILAILKAWNNAESPEEVFSLGVLSTGQ-FGIPAGLVFSMPV-SFTDGHWSVRSDVTVTDELRVNLDACADELRMERDMAA 440          
BLAST of DY257553 vs. ExPASy Swiss-Prot
Match: MDH_NOSP7 (Malate dehydrogenase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=mdh PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.055e-11
Identity = 76/258 (29.46%), Postives = 114/258 (44.19%), Query Frame = 1
Query:   37 IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVA-SRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTR-LDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEVIKDHKWLEEGFTETIQKRGGLLIKK--------WGRSSAASTSVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQEL 780
            IG N Y     ++  ++    PR PGM R  LL  N +I  E  K  NA+A S N   IVV NP +    +  + A  +P      +   LD  R +  +AL+ GV    V  M + G+H    VP    A +NG+P+ E++ D   +E     T  + GG  I +        +  +SA S  V  +   +S + P           Y  G  YG+ ED+V  +PCR  G G  E V ++I  D  R+ +  + Q +
Sbjct:   71 IGTNNYADTSGSQIVVITAGLPRKPGMSRDDLLKTNAKIVVEAAK--NAIAHSPNAIFIVVTNPLDVMTYLAWQ-ATGLPRDRIMGMAGVLDSARFEAFIALELGVLPADVKAMVL-GSHGDLMVPLSRYATVNGIPITELL-DAATIERLIERT--RNGGAEIVELMQTGGAFFAPASATSVMVESILLNQSRLLPV--------AAYLQGE-YGL-EDVVIGVPCR-LGCGGIESVLELILSDEEREGLHTSAQSV 310          
The following BLAST results are available for this feature:
BLAST of DY257553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
MDHC1_ARATH1.723e-4640.52Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis... [more]
MDHC_MEDSA5.014e-4638.60Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC2_ARATH5.014e-4640.52Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]
MDHC_BETVU7.240e-4539.33Malate dehydrogenase, cytoplasmic OS=Beta vulgaris... [more]
MDH2_RHOFD6.342e-4138.69Malate dehydrogenase 2 OS=Rhodoferax ferrireducens... [more]
MDH1B_BRAFL1.981e-2628.01Putative malate dehydrogenase 1B OS=Branchiostoma ... [more]
MDH1B_DANRE5.225e-1929.72Putative malate dehydrogenase 1B OS=Danio rerio GN... [more]
MDH_NOSP71.055e-1129.46Malate dehydrogenase OS=Nostoc punctiforme (strain... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3AF03FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257553 ID=DY257553; Name=DY257553; organism=Citrus sinensis; type=EST; length=1227bp
GAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAAATCGGAATAAATCC
ATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCTGATTGGAGCAAAGC
CTCGTGGGCCAGGAATGGAAAGAGCCGGCTTATTAGATATCAATGGCCAG
ATATTTGCAGAGCAGGGAAAAGCTCTCAATGCTGTCGCATCCCGTAATGT
CAAGGTGATAGTTGTGGGGAACCCCTGTAACACCAATGCTTTAATTTGTT
TAAAAAATGCTCCCAGCATACCTGCAAAGAACTTTCATGCTTTGACTAGA
TTAGATGAAAATAGAGCAAAATGCCAGCTCGCCCTTAAAGCAGGTGTATT
CTACGACAAAGTGTCAAATATGACCATCTGGGGAAACCACTCAACCACTC
AGGTTCCGGACTTCCTAAATGCTAGGATCAATGGCTTACCTGTGAAAGAG
GTTATCAAGGACCACAAATGGCTGGAAGAGGGGTTCACTGAAACAATCCA
GAAGAGAGGTGGACTACTGATTAAGAAATGGGGAAGATCTTCAGCTGCAT
CCACTTCTGTGTCAATTGTTGATGCCATGAAGTCTCTAGTAACTCCCACA
CCCGAGGGTGATTGGTTTTCATCTGGCGTTTATACAAATGGAAATCCTTA
CGGCATAGCAGAGGATATTGTCTTCAGCATGCCATGCAGATCAAAAGGAG
ATGGTGATTATGAACTTGTCAAGGATGTAATATTTGATGACTACCTTCGC
AAGCGGATAGCGAAGACCGAACAAGAGTTGCTAGCTGAAAAAAAATGTGT
GGCCCATCCTAACGGAGAGGGCATTGCTTTTTGTGATCTACCCAAGGACA
CTATGCTTCCCGGAGAAATGAAACCGGGGTTAGGGCTCTAAGGAATCATG
ACTGCTACTGCATAAACCTGTAAAGTGAAAAGGCCCAATATTAACTAATT
TTTTTTTTACCAAGTGTGCCGGGGAAACCGTGCCCGTTTTTAAACCATTT
AAATGAAATTTTGAAAAATGGAAAGGTGCCCACGTCCAGGTTGGGCCTGT
GCCTTGGCCTTTTTTCCCCGGGGTTTCCTCTTATTTGGTTGAAAAACCCC
CCAACCCCTGAAAAAAAACCCCCCCCCCCCCAAAAAAAAAACACCCTTTT
TTAACTTTTTTTTTTTTTTTTATTTTTTGTTTCTCCCTTTTTTTATTTGT
TTTAAAAAATAACCCCCTCCCAAGCTA
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