EY702497 | Citrus Genome Database

Overview


Name	EY702497
Unique Name	EY702497
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	940

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
EY702497_ssr263	microsatellite	EY702497_ssr263:263..274.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: DYN1_HUMAN (Dynamin-1 OS=Homo sapiens GN=DNM1 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.661e-37
Identity = 60/128 (46.88%), Postives = 78/128 (60.94%), Query Frame = 3

Query:  309 MDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            M++LI LVN++Q A +A+G + +          LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL  +    EYAEF+H   K+F DF  VR EI  ETDR TG +K IS   ++++
Sbjct:    6 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL--VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLR 123

HSP 2 Score: 74.7146 bits (182), Expect = 1.661e-37
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1

Query:  679 PYPLRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            P  LR++SP+  NLTL+DLPG T V V   P  I   I +M   ++ K  C+ILA+SP N DL  S+A+K  ++VDP+G
Sbjct:  119 PINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQG 197

[Close]

BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: DYN1_BOVIN (Dynamin-1 OS=Bos taurus GN=DNM1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.661e-37
Identity = 60/128 (46.88%), Postives = 78/128 (60.94%), Query Frame = 3

Query:  309 MDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            M++LI LVN++Q A +A+G + +          LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL  +    EYAEF+H   K+F DF  VR EI  ETDR TG +K IS   ++++
Sbjct:    6 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL--VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLR 123

HSP 2 Score: 74.7146 bits (182), Expect = 1.661e-37
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1

Query:  679 PYPLRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            P  LR++SP+  NLTL+DLPG T V V   P  I   I +M   ++ K  C+ILA+SP N DL  S+A+K  ++VDP+G
Sbjct:  119 PINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQG 197

[Close]

BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: DYN3_RAT (Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.377e-36
Identity = 61/128 (47.66%), Postives = 77/128 (60.16%), Query Frame = 3

Query:  309 MDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            M+ LI LVN++Q A +ALG         +    LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL  +    EYAEF+H   K+F DF  VR EI  ETDR TG +K IS+  ++++
Sbjct:    6 MEELIPLVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL--VTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSVPINLR 123

HSP 2 Score: 72.7886 bits (177), Expect = 1.377e-36
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1

Query:  679 PYPLRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            P  LR++SP+  NLTLIDLPG T V V   P  I   I +M   +I +  C+ILA++P N DL  S+A+K  ++VDP+G
Sbjct:  119 PINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLAKEVDPQG 197

[Close]

BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: DYN3_MOUSE (Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.794e-36
Identity = 61/128 (47.66%), Postives = 77/128 (60.16%), Query Frame = 3

Query:  309 MDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            M+ LI LVN++Q A +ALG         +    LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL  +    EYAEF+H   K+F DF  VR EI  ETDR TG +K IS+  ++++
Sbjct:    6 MEELIPLVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL--VTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSIPINLR 123

HSP 2 Score: 72.7886 bits (177), Expect = 1.794e-36
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1

Query:  679 PYPLRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            P  LR++SP+  NLTLIDLPG T V V   P  I   I +M   +I +  C+ILA++P N DL  S+A+K  ++VDP+G
Sbjct:  119 PINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLAKEVDPQG 197

[Close]

BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: DYN3_HUMAN (Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 3.044e-36
Identity = 61/128 (47.66%), Postives = 77/128 (60.16%), Query Frame = 3

Query:  309 MDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            M+ LI LVN++Q A +ALG         +    LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL  +    EYAEF+H   K+F DF  VR EI  ETDR TG +K IS+  ++++
Sbjct:    6 MEELIPLVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL--VTSKAEYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKGISSIPINLR 123

HSP 2 Score: 72.4034 bits (176), Expect = 3.044e-36
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1

Query:  679 PYPLRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            P  LR++SP+  NLTLIDLPG T V V   P  I   I  M   +I +  C+ILA++P N DL  S+A+K  ++VDP+G
Sbjct:  119 PINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPANTDLANSDALKLAKEVDPQG 197

[Close]

BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: DYN2_BOVIN (Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.763e-36
Identity = 59/128 (46.09%), Postives = 77/128 (60.16%), Query Frame = 3

Query:  309 MDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            M+ LI LVNK+Q A +++G         +    LP IA            LE+ VG+DFLPRGSGIVTRRPL+LQL  I    EYAEF+H   ++F DF  VR+EI  ETDR TG +K IS   ++++
Sbjct:    6 MEELIPLVNKLQDAFSSIGQ--------SCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQL--IFSKTEYAEFLHCKSRKFTDFEEVRQEIEAETDRVTGTNKGISPVPINLR 123

HSP 2 Score: 72.0182 bits (175), Expect = 8.763e-36
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 1

Query:  679 PYPLRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            P  LRI+SP+  NLTLIDLPG T V V   P+ I   I++M   +I +   +ILA++P N DL  S+A+K  ++VDP+G
Sbjct:  119 PINLRIYSPHVLNLTLIDLPGITKVPVGDQPQDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEVDPQG 197

[Close]

BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: DYN2_RAT (Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.487e-35
Identity = 60/128 (46.88%), Postives = 77/128 (60.16%), Query Frame = 3

Query:  309 MDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            M+ LI LVNK+Q A +++G         +    LP IA            LE+ VG+DFLPRGSGIVTRRPL+LQL  I    EYAEF+H   K+F DF  VR+EI  ETDR TG +K IS   ++++
Sbjct:    6 MEELIPLVNKLQDAFSSIGQ--------SCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQL--IFSKTEYAEFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLR 123

HSP 2 Score: 70.4774 bits (171), Expect = 1.487e-35
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1

Query:  679 PYPLRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            P  LR++SP+  NLTLIDLPG T V V   P  I   I++M   +I +   +ILA++P N DL  S+A+K  ++VDP+G
Sbjct:  119 PINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEVDPQG 197

[Close]

BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: DYN2_MOUSE (Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.487e-35
Identity = 60/128 (46.88%), Postives = 77/128 (60.16%), Query Frame = 3

Query:  309 MDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            M+ LI LVNK+Q A +++G         +    LP IA            LE+ VG+DFLPRGSGIVTRRPL+LQL  I    EYAEF+H   K+F DF  VR+EI  ETDR TG +K IS   ++++
Sbjct:    6 MEELIPLVNKLQDAFSSIGQ--------SCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQL--IFSKTEYAEFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLR 123

HSP 2 Score: 70.4774 bits (171), Expect = 1.487e-35
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1

Query:  679 PYPLRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            P  LR++SP+  NLTLIDLPG T V V   P  I   I++M   +I +   +ILA++P N DL  S+A+K  ++VDP+G
Sbjct:  119 PINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEVDPQG 197

[Close]

BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: DYN2_HUMAN (Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 5.574e-35
Identity = 59/128 (46.09%), Postives = 77/128 (60.16%), Query Frame = 3

Query:  309 MDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            M+ LI LVNK+Q A +++G         +    LP IA            LE+ VG+DFLPRGSGIVTRRPL+LQL  I    E+AEF+H   K+F DF  VR+EI  ETDR TG +K IS   ++++
Sbjct:    6 MEELIPLVNKLQDAFSSIGQ--------SCHLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQL--IFSKTEHAEFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLR 123

HSP 2 Score: 70.4774 bits (171), Expect = 5.574e-35
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1

Query:  679 PYPLRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            P  LR++SP+  NLTLIDLPG T V V   P  I   I++M   +I +   +ILA++P N DL  S+A+K  ++VDP+G
Sbjct:  119 PINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEVDPQG 197

[Close]

BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: DYNA_DICDI (Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.090e-34
Identity = 54/134 (40.30%), Postives = 76/134 (56.72%), Query Frame = 3

Query:  309 MDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKI------QEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            MD LI ++NK+Q     LG    +         LP I             LE++VG+DFLPRGSGIVTRRPL+LQL  +       + +E+ EF+H P   F DF+ +R+EI  +TDR TG++K IS   +++K
Sbjct:    1 MDQLIPVINKLQDVFNTLGSDPLD---------LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLK 125

HSP 2 Score: 71.2478 bits (173), Expect = 2.090e-34
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 1

Query:  679 PYPLRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            P  L+I+SP+  NLTL+DLPG T V V   P  I   I  M   YI K   II+A++P N DL  S+A++  ++VDPEG
Sbjct:  121 PINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEG 199

The following BLAST results are available for this feature:

BLAST of EY702497 vs. ExPASy Swiss-Prot

BLAST of EY702497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65


Match Name	E-value	Identity	Description
DYN1_HUMAN	1.661e-37	46.88	Dynamin-1 OS=Homo sapiens GN=DNM1 PE=1 SV=2	[more]
DYN1_BOVIN	1.661e-37	46.88	Dynamin-1 OS=Bos taurus GN=DNM1 PE=2 SV=1	[more]
DYN3_RAT	1.377e-36	47.66	Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2	[more]
DYN3_MOUSE	1.794e-36	47.66	Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1	[more]
DYN3_HUMAN	3.044e-36	47.66	Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4	[more]
DYN2_BOVIN	8.763e-36	46.09	Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1	[more]
DYN2_RAT	1.487e-35	46.88	Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1	[more]
DYN2_MOUSE	1.487e-35	46.88	Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2	[more]
DYN2_HUMAN	5.574e-35	46.09	Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2	[more]
DYNA_DICDI	2.090e-34	40.30	Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-007-F08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702497 ID=EY702497; Name=EY702497; organism=Citrus sinensis; type=EST; length=940bp
AACATGGTAGCCTGCAGTACCCGTCCGGAATCCCTTCCCAACCACGCGTC
CGATTGAAAGAATTGCTGGTTGTTACCGTTAGAAATTTCCGCGGGCTCCG
CCTCTCACGTCGAACTGTTCTATCTCCCCGGTTCGTTCACCGATCCAAAA
TCAACATGGCCAATCCCTCCTGCCTGGCGTTTCTTTCTCTTTCCAAAGCC
AAAATTTCAAATCAATACATCCGATAAACAACCCCCCGAGTCGACTCACT
ATCCGAGTCACACACCACCACCACCAATCAACTCAGCGATCAGAATCAGT
CCACACTCATGGATAATTTGATCACATTAGTGAATAAGATTCAAAGAGCG
TGTACGGCCCTAGGCGATCACGGCGAAGAAAGCGCGGTGCCCACTCTCTG
GGACTCCTTACCTTCCATCGCCGTTGTCGGTGGCCAGAGCTCTGGAAAGT
CTTCAGTGTTGGAAAGTGTTGTTGGAAAAGACTTTTTGCCTCGTGGATCA
GGGATTGTTACTCGGAGACCTCTAGTCTTGCAGCTTCATAAGATTCAAGA
AGGAAAAGAATATGCAGAGTTTATGCATCTTCCAAGAAAGAGGTTCAATG
ACTTCGCTGCTGTGAGGAAAGAGATTTCTGATGAGACTGATCGAGAGACT
GGTCGTTCGAAAGCAATCTCTACTGGGTCCCTATCCATTAAGGATATTTT
CTCCTAATGGTGGGAACTTGACCCTGATTGATCTTCCTGGACCTACAACA
GTTGCTGTTGACGGGCCACCTGAGAGCATCGTGCCAGACATCGAAAATAT
GGGTAAGCCCTATATTGGAAAGCCCATTTGTATTATTCTGGCAATTTCTC
CTGGCAATCAGGACCTTGGCACTTCGAATGCAATAAAATCCCCCCGGAAG
GTGGACCCCGAGGGGGGATTTATAAAATTCTCTGGACCCT