EY702497

Overview
NameEY702497
Unique NameEY702497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702497_ssr263 microsatellite EY702497_ssr263:263..274. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: DYNB_DICDI (Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.484e-27
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  679 PYPLRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            P  L+I+SP    LTL+DLPG T VA++  P  I   I++M   YI  P  IILAI+P NQD+ TS+A+K  ++VDP G
Sbjct:  273 PIVLKIYSPKVVPLTLVDLPGLTRVAIEDQPPDIEEKIKSMIIDYISNPNSIILAITPANQDIVTSDALKLAQQVDPLG 351          

HSP 2 Score: 70.0922 bits (170), Expect = 3.484e-27
Identity = 53/168 (31.55%), Postives = 80/168 (47.62%), Query Frame = 3
Query:  279 QLSDQNQS---TLMDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHK--------IQEG-------------------KEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            QL   N++   T+  +L+ ++NK+Q     +G             +LP I             LE++VG+DFLPRGSG+VTRRPLVLQL++        + E                    +E+ EF H    RFN F  +++EI  ET+R  G +K IS+  + +K
Sbjct:  121 QLFKNNETFNETVGASLLPIINKLQENAALIGSE----------ITLPQIIVVGSQSSGKSSVLENLVGRDFLPRGSGLVTRRPLVLQLYQTTTTSRNNVNENEDEDEDDNYYDNDNDDNSLEEWGEFGHTGTNRFN-FQEIKEEIERETERIAGPNKDISSEPIVLK 277          
BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: YB68_SCHPO (Dynamin-like protein C12C2.08 OS=Schizosaccharomyces pombe GN=SPBC12C2.08 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.699e-26
Identity = 53/165 (32.12%), Postives = 77/165 (46.67%), Query Frame = 3
Query:  309 MDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQ-------------------------------------EGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            M+ LI LVN++Q            + + + +  LPSI             LE++VGKDFLPRG+GIVTRRPL+LQL  ++                                     E ++YAEF+H+P  +F D   VR EI +ET R  G +K I+   +++K
Sbjct:    1 MEQLIPLVNQLQDLVY--------NTIGSDFLDLPSIVVVGSQSCGKSSVLENIVGKDFLPRGTGIVTRRPLILQLINLKRKTKNNHDEESTSDNNSEETSAAGETGSLEGIEEDSDEIEDYAEFLHIPDTKFTDMNKVRAEIENETLRVAGANKGINKLPINLK 157          

HSP 2 Score: 65.0846 bits (157), Expect = 1.699e-26
Identity = 35/79 (44.30%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  679 PYPLRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            P  L+I+S    NLTLIDLPG T + V   P  I     ++   YI +P  IILA+SP N D+  S  +K  R VDP+G
Sbjct:  153 PINLKIYSTRVLNLTLIDLPGLTKIPVGDQPTDIEAQTRSLIMEYISRPNSIILAVSPANFDIVNSEGLKLARSVDPKG 231          
BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: DYN1_CAEEL (Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 2.371e-23
Identity = 69/141 (48.94%), Postives = 88/141 (62.41%), Query Frame = 3
Query:  282 LSDQNQSTLMDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIKDIFS 704
            +S QNQ   M  LI ++N++Q A + LG         ++   LP IA            LE+ VGKDFLPRGSGIVTRRPL+LQL  IQ+  EYAEF+H    RF DF AVRKEI DETDR TG++K IS   ++++ +FS
Sbjct:    1 MSWQNQG--MQALIPVINRVQDAFSQLGT--------SVSFELPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQL--IQDRNEYAEFLHKKGHRFVDFDAVRKEIEDETDRVTGQNKGISPHPINLR-VFS 128          

HSP 2 Score: 80.4925 bits (197), Expect = 1.548e-14
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  673 LGPYP--LRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            + P+P  LR+FSPN  NLTLIDLPG T V V   P  I   I +M   +I +  C+ILA++P N DL TS+A+K  ++VDP+G
Sbjct:  117 ISPHPINLRVFSPNVLNLTLIDLPGLTKVPVGDQPADIEQQIRDMILTFINRETCLILAVTPANSDLATSDALKLAKEVDPQG 199          
BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: MX_PERFL (Interferon-induced GTP-binding protein Mx (Fragment) OS=Perca fluviatilis GN=mx PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 8.369e-18
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  688 LRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            L I SP+  +LTLIDLPG   VAV G PE+I   I+ + + +I +   I L + P N D+ T+ A+K  ++VDP+G
Sbjct:  129 LEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQKFIKRQETISLVVVPCNVDIATTEALKMAQEVDPDG 204          

HSP 2 Score: 49.6766 bits (117), Expect = 8.369e-18
Identity = 37/98 (37.76%), Postives = 51/98 (52.04%), Query Frame = 3
Query:  405 SLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKE-YAEFMHLP-RKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            +LP+IA            LE++ G   LPRGSGIVTR PL L++ + QEG+E Y +  +    K   D A V K+I D  D   G    IS   +S++
Sbjct:   34 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRRQEGEEWYGKISYQDCEKEIEDPADVEKKIRDAQDEMAGVGVGISDDLISLE 130          
BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: MX1_SHEEP (Interferon-induced GTP-binding protein Mx1 OS=Ovis aries GN=MX1 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.913e-16
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  688 LRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            L + SP+  +LTLIDLPG T VAV   P  I   I+++ + YI +   I L + P N D+ T+ A++  + VDP+G
Sbjct:  159 LEVSSPHVPDLTLIDLPGITRVAVGNQPHDIEYQIKSLIRKYILRQETINLVVVPANVDIATTEALRMAQDVDPQG 234          

HSP 2 Score: 48.1358 bits (113), Expect = 1.913e-16
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 3
Query:  405 SLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQ-EGKEYAEFMHLPRK-RFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            +LP+IA            LE++ G   LPRGSGIVTR PLVL+L K++ EG+   +   L R+   +D + V KEIS+      G    IS   +S++
Sbjct:   64 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLRLKKLEKEGEWKGKVSFLDREIEISDASQVEKEISEAQIAIAGEGMGISHELISLE 160          
BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: MX_DICLA (Interferon-induced GTP-binding protein Mx OS=Dicentrarchus labrax GN=mx PE=2 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 1.914e-16
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  688 LRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            L I SP+  +LTLIDLPG   VAV G PE+I   I+ + + +I K   I L + P N D+ T+ A+   ++VDP+G
Sbjct:  127 LEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQKFITKQETISLVVVPCNVDIATTEALNMAQRVDPDG 202          

HSP 2 Score: 45.4394 bits (106), Expect = 1.914e-16
Identity = 33/98 (33.67%), Postives = 52/98 (53.06%), Query Frame = 3
Query:  405 SLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKE-YAEFMHLP-RKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            +LP+IA            LE++ G   LPRGSGIVTR PL L++ +  EG+E Y +  ++   +   D A V K+I +  ++  G    IS   +S++
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKNEGEEWYGKITYIGFEENIKDPADVEKKIREAQNKIAGPGSGISEDLISLE 128          
BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: MX_ONCMY (Interferon-induced GTP-binding protein Mx OS=Oncorhynchus mykiss GN=mx PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.916e-16
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  688 LRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            L I SP+  +LTLIDLPG   VAV G PE+I   I+ + + +I K   I L + P N D+ T+ A+K  ++VDPEG
Sbjct:  128 LEIGSPDVPDLTLIDLPGIARVAVKGQPENIGEQIKRLIRKFIMKQETISLVVVPCNVDIATTEALKMAQEVDPEG 203          

HSP 2 Score: 43.1282 bits (100), Expect = 1.916e-16
Identity = 32/98 (32.65%), Postives = 50/98 (51.02%), Query Frame = 3
Query:  405 SLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLP--RKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            +LP+IA            LE++ G   LPRGSGIVTR PL L++ + +EG+E+   +      +   D + V K+I +  D   G    IS   +S++
Sbjct:   33 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWHGKISYQDHEEEIEDPSDVEKKIREAQDEMAGVGVGISDDLISLE 129          
BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: MSP1_SCHPO (Protein msp1, mitochondrial OS=Schizosaccharomyces pombe GN=msp1 PE=2 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 3.210e-16
Identity = 38/132 (28.79%), Postives = 61/132 (46.21%), Query Frame = 3
Query:  240 VDSLSESHTTTTNQLSDQNQSTLMDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQL-HKIQEGKEYAEFMHLPRKRFNDFAAVRKEISD 632
            VDS+    T T ++     Q +  D ++    K+      L D  + ++  TL    PSI             LE++VG +FLP+GS +VTRRP+ L L H       Y EF  +   +  DF+ ++  ++D
Sbjct:  211 VDSVDGEDTLTADEKRKLAQESKEDRMMLFTKKMIEIRNILQDIQDNNSAVTL----PSIVVIGSQSSGKSSVLEAIVGHEFLPKGSNMVTRRPIELTLVHSADTAIPYGEFSGVQLGKITDFSKIQHILTD 338          

HSP 2 Score: 48.9062 bits (115), Expect = 3.210e-16
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  679 PYPLRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            P  L I++ +  NL+LIDLPG   +  +  P  +   I  + + YI +P  IILA+   + DL  S A+++ R+VDP G
Sbjct:  353 PIRLTIYASHIPNLSLIDLPGYIQIHSEDQPADLDMKISKLCEKYIREP-NIILAVCAADVDLANSAALRASRRVDPLG 430          
BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: MX2_RAT (Interferon-induced GTP-binding protein Mx2 OS=Rattus norvegicus GN=Mx2 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 4.200e-16
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1
Query:  688 LRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            L + SP+  +LTLIDLPG T VAV   P  I   I+ +   YI K   I L + P N D+ T+ A+   +KVDP+G
Sbjct:  162 LDVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQIKRLITNYIQKQETINLVVVPSNVDIATTEALSMAQKVDPDG 237          

HSP 2 Score: 46.595 bits (109), Expect = 4.200e-16
Identity = 43/136 (31.62%), Postives = 65/136 (47.79%), Query Frame = 3
Query:  291 QNQSTLMDNLITLVNKIQRACTALGDHGEESAVPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIKDI 698
            +N    ++NL +   +  R C  L D      V     +LP+IA            LE++ G   LPRGSGIVTR PLVL+L K+ +G+E+        K    +  +  E+SD ++ E    +AI+TG   I  +
Sbjct:   30 ENNKDSLNNLCSQYEEKVRPCIDLIDSLRALGVEQDL-ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLNQGEEW--------KGKVTYDDIEVELSDPSEVE----EAINTGQNHIAGV 151          
BLAST of EY702497 vs. ExPASy Swiss-Prot
Match: MX_SINCH (Interferon-induced GTP-binding protein Mx OS=Siniperca chuatsi GN=mx PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.465e-16
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  688 LRIFSPNGGNLTLIDLPGPTTVAVDGPPESIVPDIENMGKPYIGKPICIILAISPGNQDLGTSNAIKSPRKVDPEG 915
            L I SP   +LTLIDLPG   VAV G PE+I   I+ + + +I K   I L + P N D+ T+ A+   ++VDP+G
Sbjct:  127 LEIGSPGVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQTFITKQETISLVVVPCNVDIATTEALNMAQRVDPDG 202          

HSP 2 Score: 44.669 bits (104), Expect = 5.465e-16
Identity = 34/98 (34.69%), Postives = 51/98 (52.04%), Query Frame = 3
Query:  405 SLPSIAXXXXXXXXXXXXLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKE-YAEFMHL-PRKRFNDFAAVRKEISDETDRETGRSKAISTGSLSIK 692
            +LP+IA            LE++ G   LPRGSGIVTR PL L++ + +EG+E Y +  +    +   D A V K+I +  D   G    IS   +S++
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYQNHEEEIEDPADVEKKIREAQDEMAGVGVGISDDLISLE 128          
The following BLAST results are available for this feature:
BLAST of EY702497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
DYNB_DICDI3.484e-2749.37Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3... [more]
YB68_SCHPO1.699e-2632.12Dynamin-like protein C12C2.08 OS=Schizosaccharomyc... [more]
DYN1_CAEEL2.371e-2348.94Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV... [more]
MX_PERFL8.369e-1843.42Interferon-induced GTP-binding protein Mx (Fragmen... [more]
MX1_SHEEP1.913e-1640.79Interferon-induced GTP-binding protein Mx1 OS=Ovis... [more]
MX_DICLA1.914e-1643.42Interferon-induced GTP-binding protein Mx OS=Dicen... [more]
MX_ONCMY1.916e-1646.05Interferon-induced GTP-binding protein Mx OS=Oncor... [more]
MSP1_SCHPO3.210e-1628.79Protein msp1, mitochondrial OS=Schizosaccharomyces... [more]
MX2_RAT4.200e-1643.42Interferon-induced GTP-binding protein Mx2 OS=Ratt... [more]
MX_SINCH5.465e-1643.42Interferon-induced GTP-binding protein Mx OS=Sinip... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-F08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702497 ID=EY702497; Name=EY702497; organism=Citrus sinensis; type=EST; length=940bp
AACATGGTAGCCTGCAGTACCCGTCCGGAATCCCTTCCCAACCACGCGTC
CGATTGAAAGAATTGCTGGTTGTTACCGTTAGAAATTTCCGCGGGCTCCG
CCTCTCACGTCGAACTGTTCTATCTCCCCGGTTCGTTCACCGATCCAAAA
TCAACATGGCCAATCCCTCCTGCCTGGCGTTTCTTTCTCTTTCCAAAGCC
AAAATTTCAAATCAATACATCCGATAAACAACCCCCCGAGTCGACTCACT
ATCCGAGTCACACACCACCACCACCAATCAACTCAGCGATCAGAATCAGT
CCACACTCATGGATAATTTGATCACATTAGTGAATAAGATTCAAAGAGCG
TGTACGGCCCTAGGCGATCACGGCGAAGAAAGCGCGGTGCCCACTCTCTG
GGACTCCTTACCTTCCATCGCCGTTGTCGGTGGCCAGAGCTCTGGAAAGT
CTTCAGTGTTGGAAAGTGTTGTTGGAAAAGACTTTTTGCCTCGTGGATCA
GGGATTGTTACTCGGAGACCTCTAGTCTTGCAGCTTCATAAGATTCAAGA
AGGAAAAGAATATGCAGAGTTTATGCATCTTCCAAGAAAGAGGTTCAATG
ACTTCGCTGCTGTGAGGAAAGAGATTTCTGATGAGACTGATCGAGAGACT
GGTCGTTCGAAAGCAATCTCTACTGGGTCCCTATCCATTAAGGATATTTT
CTCCTAATGGTGGGAACTTGACCCTGATTGATCTTCCTGGACCTACAACA
GTTGCTGTTGACGGGCCACCTGAGAGCATCGTGCCAGACATCGAAAATAT
GGGTAAGCCCTATATTGGAAAGCCCATTTGTATTATTCTGGCAATTTCTC
CTGGCAATCAGGACCTTGGCACTTCGAATGCAATAAAATCCCCCCGGAAG
GTGGACCCCGAGGGGGGATTTATAAAATTCTCTGGACCCT
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