EY702494

Overview
NameEY702494
Unique NameEY702494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNE4_HUMAN (Copine-4 OS=Homo sapiens GN=CPNE4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.322e-13
Identity = 50/154 (32.47%), Postives = 72/154 (46.75%), Query Frame = 2
Query:  242 VGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGD------ASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH-----SGGQYHVLVIIADGQVTXSVDTEHGAI 667
            V IDFT SN           SLH+I   Q N Y +A+  +G+    +D D + P FGFG         +HD  + +F  D   C G + V+  Y+  +P L+L GPT+ APII+                QY +L+I+ DG +T   DT    +
Sbjct:  310 VAIDFTASN----GDPRNSCSLHYIHPYQPNEYLKALVAVGEICQDYDSDKMFPAFGFGARIPPEYTVSHDFAI-NFNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQKVAKSASEETNTKEASQYFILLILTDGVITDMADTREAIV 458          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNA_DICDI (Copine-A OS=Dictyostelium discoideum GN=cpnA PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.649e-12
Identity = 53/159 (33.33%), Postives = 72/159 (45.28%), Query Frame = 2
Query:  233 NLIVGIDFTKSNEWTGARSFQRRSLHHIG-DDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYP-----DEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIV----EHSGGQYHVLVIIADGQVTXSVDTEHGAISSQG 679
            NLIVGID T SN      S    SLH+      N Y  AI  +G  +  +    LIP +GFG       EV   +P         C G   VL  Y + +  ++L GPT FAP+I MA          S  +Y +L+II DG++  + +T    + S G
Sbjct:  286 NLIVGIDCTASN----GDSNDPNSLHYKNAQGLNQYANAICSVGNVIVPYTTTPLIPVYGFGGIMPGQSEVSHCFPMTLNASNTLCCGVNGVLDCYYDNISKIQLHGPTYFAPLINMAARYASQGQSQSNQKYTILMIITDGEILDADNTIDAIVKSSG 440          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNE6_PONAB (Copine-6 OS=Pongo abelii GN=CPNE6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 54/148 (36.49%), Postives = 71/148 (47.97%), Query Frame = 2
Query:  242 VGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIV--EHSGGQ---YHVLVIIADGQVTXSVDT 652
            V IDFT SN     RS Q  SLH +   Q N Y QA+  +G     +D D   P FGFG     + EV      +F P+   C     V+  YR  +P ++L GPT+ APII         E S GQ   Y VL+++ DG V+   +T
Sbjct:  309 VAIDFTASNG--DPRSSQ--SLHCLSPRQPNHYLQALRAVGGICQDYDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPIINRVAEPAQREQSTGQATKYSVLLVLTDGVVSDMAET 452          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNE6_MOUSE (Copine-6 OS=Mus musculus GN=Cpne6 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 54/148 (36.49%), Postives = 71/148 (47.97%), Query Frame = 2
Query:  242 VGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIV--EHSGGQ---YHVLVIIADGQVTXSVDT 652
            V IDFT SN     RS Q  SLH +   Q N Y QA+  +G     +D D   P FGFG     + EV      +F P+   C     V+  YR  +P ++L GPT+ APII         E S GQ   Y VL+++ DG V+   +T
Sbjct:  309 VAIDFTASNG--DPRSSQ--SLHCLSPRQPNHYLQALRTVGGICQDYDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPIINRVAEPAQREQSTGQATKYSVLLVLTDGVVSDMAET 452          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNE6_HUMAN (Copine-6 OS=Homo sapiens GN=CPNE6 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 54/148 (36.49%), Postives = 71/148 (47.97%), Query Frame = 2
Query:  242 VGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIV--EHSGGQ---YHVLVIIADGQVTXSVDT 652
            V IDFT SN     RS Q  SLH +   Q N Y QA+  +G     +D D   P FGFG     + EV      +F P+   C     V+  YR  +P ++L GPT+ APII         E S GQ   Y VL+++ DG V+   +T
Sbjct:  309 VAIDFTASNG--DPRSSQ--SLHCLSPRQPNHYLQALRAVGGICQDYDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPIINRVAEPAQREQSTGQATKYSVLLVLTDGVVSDMAET 452          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNE6_BOVIN (Copine-6 OS=Bos taurus GN=CPNE6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.182e-12
Identity = 54/148 (36.49%), Postives = 71/148 (47.97%), Query Frame = 2
Query:  242 VGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIV--EHSGGQ---YHVLVIIADGQVTXSVDT 652
            V IDFT SN     RS Q  SLH +   Q N Y QA+  +G     +D D   P FGFG     + EV      +F P+   C     V+  YR  +P ++L GPT+ APII         E S GQ   Y VL+++ DG V+   +T
Sbjct:  309 VAIDFTASNG--DPRSSQ--SLHCLSPRQPNHYLQALRAVGGICQDYDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPIINRVAGPAQREQSTGQATKYSVLLVLTDGVVSDMAET 452          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNE_DICDI (Copine-E OS=Dictyostelium discoideum GN=cpnE PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.381e-11
Identity = 56/194 (28.87%), Postives = 95/194 (48.97%), Query Frame = 2
Query:  233 NLIVGIDFTKSNEWTGARSFQRRSLHH-IGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFG-----DASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMA----ITIVEHSGGQYHVLVIIADGQVTXSVDTEHGAISSQGKETG*SIC*SE*GPLGDYIRLG*EMGPWDLMREID 784
            NL++ ID T SN     R+    SLH+     ++ Y ++I  +G  L+ +D D  I   GFG       ++H    F F P  +   G EEVL  Y +++P ++L+ PT+F  II+ A    I  V+    +Y +L+I+ DG++T   +T    + +  K            PL   I +G  +  ++LM+++D
Sbjct:  345 NLMIAIDCTASNGMPSDRT----SLHYNTPTHESEYARSILAVGNVLAPYDSDGKIELLGFGAERFGGVTSH---CFQFGPKAE-ARGIEEVLSTYNKVIPTIKLSYPTNFQEIIKHAHKKSIKGVDSKNQKYTILLILTDGEITDMEETIEEIVKASSK-----------APLSIVI-VGVGIASFELMKKLD 518          
The following BLAST results are available for this feature:
BLAST of EY702494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
CPNE4_HUMAN3.322e-1332.47Copine-4 OS=Homo sapiens GN=CPNE4 PE=2 SV=1[more]
CPNA_DICDI1.649e-1233.33Copine-A OS=Dictyostelium discoideum GN=cpnA PE=2 ... [more]
CPNE6_PONAB6.265e-1236.49Copine-6 OS=Pongo abelii GN=CPNE6 PE=2 SV=1[more]
CPNE6_MOUSE6.265e-1236.49Copine-6 OS=Mus musculus GN=Cpne6 PE=1 SV=1[more]
CPNE6_HUMAN6.265e-1236.49Copine-6 OS=Homo sapiens GN=CPNE6 PE=1 SV=3[more]
CPNE6_BOVIN8.182e-1236.49Copine-6 OS=Bos taurus GN=CPNE6 PE=2 SV=1[more]
CPNE_DICDI2.381e-1128.87Copine-E OS=Dictyostelium discoideum GN=cpnE PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-F05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702494 ID=EY702494; Name=EY702494; organism=Citrus sinensis; type=EST; length=859bp
GGTCTAGTTTTATTCATGGAATCATCACAATTATCCGCAGCAGCCACCAT
ATGGGCAACCAAGTCAAGAGTATGCCCCACAACAGTATTATGCCACTCCA
TCTCAAAGCTACAGTGGTCGGGGCCCAGAGTCGACCAGGAAGCTGGAGAG
GAAGTACTCCAAGATAGATGATAACTATCATAGCCTGGAGCAGGTTACAG
ATGCTTTGGCACGTGCTGGGCTAGAGTCATCAAATCTCATTGTTGGTATT
GATTTCACAAAGAGCAATGAGTGGACTGGTGCAAGATCATTTCAGCGGAG
AAGTCTACATCACATTGGTGATGATCAGAATCCCTACGAACAAGCAATAT
CAATTATTGGAAAAACATTGTCTTCCTTTGATGAGGATAACTTAATTCCA
TGTTTTGGGTTTGGAGATGCTTCAACACATGATCAAGAAGTGTTCAGTTT
TTATCCGGACGAAAAGTTTTGTAATGGATTTGAAGAAGTGTTGAGACGAT
ATAGAGAATTGGTCCCTCACCTACGACTTGCAGGACCAACATCTTTTGCC
CCCATTATTGAAATGGCCATCACTATTGTTGAGCACAGTGGGGGGCAGTA
CCATGTCTTAGTGATAATAGCTGATGGGCAGGTGACCANAAGTGTTGATA
CTGAGCATGGCGCCATTAGCTCACAGGGAAAAGAAACTGGTTGAAGCATT
TGTTAAAGCGAGTGAGGACCCCTTGGCGATTATATTAGATTGGGGTAGGA
GATGGGCCCATGGGACCTGATGAGGGAAATTGATGAGTACATTCCTGCTC
GAGGCATTGGATAATTTTCCGGTTGGAAATTTTCCCAAATTATGCCAAGG
ATGTTGAGC
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