EY702489

Overview
NameEY702489
Unique NameEY702489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.765e-19
Identity = 38/80 (47.50%), Postives = 47/80 (58.75%), Query Frame = 3
Query:  441 LHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPF 680
            L  VEPYV YG PNL SVRELIY+ G       R  L  DN++IE ALG++ +I +E+ + EI        E   FLWPF
Sbjct:  133 LRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIAL-SDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPF 211          

HSP 2 Score: 51.2174 bits (121), Expect = 5.765e-19
Identity = 24/58 (41.38%), Postives = 34/58 (58.62%), Query Frame = 1
Query:  181 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINGGEPR 354
            RK  + R + +   Y + ++E IRL R AK KG  +V  E KLLF+IRI G+    P+
Sbjct:   47 RKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPK 104          
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL7_DEBHA (60S ribosomal protein L7 OS=Debaryomyces hansenii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.717e-18
Identity = 56/142 (39.44%), Postives = 79/142 (55.63%), Query Frame = 3
Query:  348 AERPRKFCSFSV*DRFLMVSF*K*TKPHSIWLHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLGGLKNKR-NPYG*GGDAGNREEYPN 770
            A +PRK        +     F + TK  S  L   EPY+ YGYPNL ++R L+Y+ G       R  L  DN+IIE  LG++GI+ +E+ + EI T  P   + N+FLWPF+   P GG + ++   +  GGD GNREE+ N
Sbjct:   94 APKPRKVLQLLRLTQINAGVFVRLTKATSELLKLAEPYIAYGYPNLSTIRHLVYKRGHGKINKQRIAL-SDNAIIEANLGKYGILSIEDLIHEIYTVGPNFKQANNFLWPFKLSNPNGGFRTRKFFHFIQGGDTGNREEFIN 234          
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL7_CAEEL (60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.380e-16
Identity = 46/110 (41.82%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  441 LHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLGGLKNKRNPYG*GGDAGNREEYPN 770
            L  +EPYV +GYPN K++ +L+Y+ G      +R  +  DN+I+E +LG+  II +E+   EI T  P   E  +FLWPF+   P GG   K N +  GGD GNRE+  N
Sbjct:  129 LRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPI-TDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQIN 237          
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.305e-16
Identity = 50/113 (44.25%), Postives = 67/113 (59.29%), Query Frame = 3
Query:  441 LHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*P--DNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLGG-LKNKRNPYG*GGDAGNREEYPN 770
            L +V+PYVTYGYPN KSV++LIY++G T   I  G   P  DN+IIE ALG+H I+ +E+ + EI        E   FL P +   P+   L  K+  +  GGD GNRE+  N
Sbjct:  131 LLKVQPYVTYGYPNDKSVKDLIYKKGCT---IIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNREDKIN 240          

HSP 2 Score: 26.9498 bits (58), Expect = 5.305e-16
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  353 ETKKILQLLRLRQIFNGVFLK 415
            +TK+IL  L+L+ +F GVF K
Sbjct:  102 KTKRILNNLQLKSVFTGVFAK 122          
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.420e-14
Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 3
Query:  441 LHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLGGLKNKRNPYG*GGDAGNREEYPN 770
            + +VEPYVTYGYP+   ++ LIY+ G  A    + +   +N++IE  LG+ GI  +E+ + EI T  P   E N FLW F+ + P GG   KR  +   GD GNRE+  N
Sbjct:  133 IRKVEPYVTYGYPSRAVIKNLIYKRGY-AKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRRSFINQGDWGNREDLIN 241          
BLAST of EY702489 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.420e-14
Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 3
Query:  441 LHRVEPYVTYGYPNLKSVRELIYQEGVTAN*ISRGLL*PDNSIIEPALGQHGIIRMENPLPEILTGWPPLSEGNHFLWPFQPQAPLGGLKNKRNPYG*GGDAGNREEYPN 770
            + +VEPYVTYGYP+   ++ LIY+ G  A    + +   +N++IE  LG+ GI  +E+ + EI T  P   E N FLW F+ + P GG   KR  +   GD GNRE+  N
Sbjct:  133 IRKVEPYVTYGYPSRAVIKNLIYKRGY-AKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRKSFINQGDWGNREDLIN 241          
The following BLAST results are available for this feature:
BLAST of EY702489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL7A_SCHPO5.765e-1947.5060S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]
RL7_DEBHA4.717e-1839.4460S ribosomal protein L7 OS=Debaryomyces hansenii ... [more]
RL7_CAEEL3.380e-1641.8260S ribosomal protein L7 OS=Caenorhabditis elegans... [more]
RL71_ARATH5.305e-1644.2560S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL72_PARTE1.420e-1440.9160S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE1.420e-1440.9160S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-E12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702489 ID=EY702489; Name=EY702489; organism=Citrus sinensis; type=EST; length=887bp
CCACGCGTCCGGGCTCCGTGAAGAAGAAGATCTAAAAGACCTCTAAGAAC
AAAAGAGATGGCTGAAGCGGCAGCTGTTGTGGTACCAGAGTCAGTGTTGA
AGAACAAAAAGACAGAGGAGGAATGGGGAGGGGGCAAGAAGCAGGAGCTG
GAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGCTCATTTACAACAG
AACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAAAAAGAACTCATTC
GTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTATGTCAACCCAGAA
GCTAAGCTTTTGTTTATCATCAGGATTCGCGGTATCAATGGTGGTGAGCC
GAGAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGACAGATTTTTAAT
GGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATATGGCTGCACAGAG
TTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAGAGTGTCAGAGAA
CTGATTTACCAAGAGGGGGTTACGGCAAATTAAATAAGCAGAGGATTGCT
TTGACCCGACAATTCTATCATTGAACCGGCTCTTGGGCAGCATGGAATTA
TCCGCATGGAAAATCCCCTCCCTGAGATTTTGACTGGTTGGCCCCCACTT
TCGGAGGGAAACCACTTCCTATGGCCCTTCCAGCCTCAGGCACCCTTGGG
GGGCCTGAAGAACAAGAGGAACCCCTATGGTTAAGGGGGTGATGCCGGAA
ACCGGGAAGAATACCCCAATGGACCCCCTCAAAGGGCGGACTACGCCTCC
TGCGAATACCCTCCCCCTTTTGAAAAATTTTGAGGGACCACCATCCTAAC
TTTGCCTCTTGGGGGTTCTATTCCCCCACCTTTCCCC
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