EY702482

Overview
NameEY702482
Unique NameEY702482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702482_ssr437 microsatellite EY702482_ssr437:437..448. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6928 contig Csv1_Contig6928:1258..2049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.260e-16
Identity = 45/65 (69.23%), Postives = 49/65 (75.38%), Query Frame = 3
Query:  177 VFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 371
            VF L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGNL +GFAEAA
Sbjct:  205 VFGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 265          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.666e-16
Identity = 44/64 (68.75%), Postives = 48/64 (75.00%), Query Frame = 3
Query:  180 FDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 371
            F L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGNL +GFAEAA
Sbjct:  207 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 266          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: CARDE_CYNCA (Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.666e-16
Identity = 44/64 (68.75%), Postives = 48/64 (75.00%), Query Frame = 3
Query:  180 FDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 371
            F L P +Y+L+   G A QCISGFTA D A   GPLWILGDVFM  YHTVFDYGNL +GFAEAA
Sbjct:  165 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 224          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: CATE_RAT (Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 6.252e-16
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  105 NGESAVDCDNLSSMANGSFTIGGKVFDLAPNEYVL-EVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 368
            +GE AVDC  L+ M N +F I G  + L+P  Y+L ++ +G+   C SGF   D+ PP GPLWILGDVF+ ++++VFD GN  +G A A
Sbjct:  309 DGEYAVDCATLNMMPNVTFLINGVSYTLSPTAYILPDLVDGMQF-CGSGFQGLDIQPPAGPLWILGDVFIRKFYSVFDRGNNQVGLAPA 396          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 3
Query:  105 NGESAVDCDNLSSMANGSFTIGGKVFDLAPNEY-VLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 368
            +GE AV+C NL+ M + +FTI G  + L+P  Y +L+  +G+   C SGF   D+ PP GPLWILGDVF+ ++++VFD GN  +G A A
Sbjct:  312 DGEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQF-CSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPA 399          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 3
Query:  105 NGESAV-DCDNLSSMANGSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 368
            NGE    DC  ++++ N + T+ G+ F L P EYVLEV E    +C+SGF   ++    G  WILGDVF+  Y+TVFD+GN  +GFA A
Sbjct:  294 NGEGVFSDCSVINTLPNVTITVAGREFVLTPKEYVLEVTEFGKTECLSGFMGIELN--MGNFWILGDVFISAYYTVFDFGNKQVGFATA 380          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: CATE_MOUSE (Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.293e-15
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 3
Query:  105 NGESAVDCDNLSSMANGSFTIGGKVFDLAPNEYVL-EVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 368
            +GE AVDC  L +M N +F I    + L P +Y+L ++ +G+   C SGF   D+ PP GPLWILGDVF+ ++++VFD GN  +G A A
Sbjct:  308 DGEYAVDCATLDTMPNVTFLINEVSYTLNPTDYILPDLVDGMQF-CGSGFQGLDIPPPAGPLWILGDVFIRQFYSVFDRGNNQVGLAPA 395          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: PEPA_RHIFE (Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.011e-14
Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  105 NGESAVDCDNLSSMANGSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 371
            NGE  V C  ++++ N  FTI G  + L P+ YVL+  +G    C SGF   D+    G LWILGDVF+ +Y TVFD GN  +G A  A
Sbjct:  302 NGEMVVSCSAINTLPNIVFTINGVQYPLPPSAYVLQSQQG----CTSGFQGMDIPTSSGELWILGDVFIRQYFTVFDRGNNQVGLAPVA 386          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.011e-14
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 3
Query:   93 LPSPNGESAVDCDNLSSMANGSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLS----IGFAEA 368
            +P   GE  + C  +  +   SF +GG  F+L  ++YV++        C+SGF A DV PP GP WILGDVF+G Y  VFD G++     +G A A
Sbjct:  306 IPLLAGEYIILCSEIPKLPAVSFLLGGVWFNLTAHDYVIQTTRNGVRLCLSGFQALDVPPPAGPFWILGDVFLGTYVAVFDRGDMKSSARVGLARA 401          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.431e-14
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 3
Query:   72 VNQLCDRLPSPNGESAVDCDNLSSMANGSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIG 356
            +N+     P  NG+  + C    ++   SF +GG  F+L   +YV+++ +     C+ GF A D+  P GPLWILGDVF+G Y  VFD G+ ++G
Sbjct:  294 LNKAIGGYPFLNGQYFIQCSKTPTLPPVSFHLGGVWFNLTGQDYVIKILQSDVGLCLLGFQALDIPKPAGPLWILGDVFLGPYVAVFDRGDKNVG 388          
The following BLAST results are available for this feature:
BLAST of EY702482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CARDH_CYNCA1.260e-1669.23Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDG_CYNCA3.666e-1668.75Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDE_CYNCA3.666e-1668.75Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CATE_RAT6.252e-1647.19Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3[more]
CATE_HUMAN1.393e-1547.19Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
CATD_DICDI2.376e-1546.07Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]
CATE_MOUSE5.293e-1546.07Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1[more]
PEPA_RHIFE2.011e-1444.94Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 ... [more]
NAPSA_HUMAN2.011e-1440.63Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
NAPSA_MOUSE3.431e-1437.89Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-E04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702482 ID=EY702482; Name=EY702482; organism=Citrus sinensis; type=EST; length=792bp
ATTCCCTGCACAACCCACGCGTCCGGAACAAGCTGTCGCGAAATGAGACA
GCAGATCAAATCTTGAATTATGTGAATCAGCTTTGTGACCGTCTGCCCAG
TCCAAATGGAGAATCAGCTGTTGATTGTGACAATTTATCTTCCATGGCCA
ATGGTTCATTTACAATTGGTGGCAAAGTATTTGACCTTGCACCAAATGAG
TATGTTCTTGAAGTGGGAGAGGGAGTTGCAGCCCAATGCATCAGTGGATT
TACTGCTTTCGATGTGGCCCCTCCGCGTGGTCCTCTGTGGATTCTGGGAG
ATGTTTTCATGGGTCGCTATCACACTGTGTTCGACTACGGCAACTTGTCT
ATTGGATTCGCCGAAGCAGCTTGAACAAAATCCACTGGCTTCGTCCATTT
CCATAACTAGCTTGTTGTAATAATTATATACACATGCATACATACATATA
TATGTGTATATATGTGTGTGTTTGTGTCTCTGTGTGTGTATTATAATCCA
GTCCAGGATCGGACTTTATTAGAATCCGGAAAGGTTATTAAACCGTGCGG
TTTAGGTTTAATAGCATAATGCCATTCTACTATTAAACCATGTAGTTTGA
TCATTTTCATGGTCATTATACTATTAAACCAAACGGGTTAATAACTTTCC
CAAGCATTAACAAATGCAGGATCCAAAACTAAAACATTTATCTATATATG
CACCATGGTGATANGATATAGACTTATACTAAAACTCATTTGTAAAATAT
TTGCAGGTAATAATGTGTATTTGCCATAAAAAAAAAAAAAAA
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