EY702482

Overview
NameEY702482
Unique NameEY702482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702482_ssr437 microsatellite EY702482_ssr437:437..448. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6928 contig Csv1_Contig6928:1258..2049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 3
Query:   93 LPSPNGESAVDCDNLSSMANGSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGR 317
            +P   GE  + C+ +SS+   +  +GGK + L+P +Y L+V +     C+SGF   D+ PP GPLWILGDVF+GR
Sbjct:  291 VPLIQGEYMIPCEKVSSLPQVTLKLGGKDYTLSPEDYTLKVSQAGTTVCLSGFMGMDIPPPGGPLWILGDVFIGR 365          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  105 NGESAVDCDNLSSMANGSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 368
            +GE AV+C+NL+ M + +F I G  + L+   Y L         C SGF   D+ PP GPLWILGDVF+ ++++VFD G+  +G A A
Sbjct:  307 DGEYAVECENLNIMPDVTFVINGVPYTLSATAYTLPDFVDGMQFCGSGFQGLDIQPPAGPLWILGDVFIRQFYSVFDRGSNRVGLAPA 394          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 6.470e-13
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  105 NGESAVDCDNLSSMANGSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 371
            +GE  + C ++ S+ +  FTI G  + L+P+ Y+L+  +     C SGF   DV    G LWILGDVF+ +Y+TVFD  N  +G A  A
Sbjct:  301 DGEMVISCSSIDSLPDIVFTINGVQYPLSPSAYILQDDDS----CTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 385          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: CARP_NEUCR (Vacuolar protease A OS=Neurospora crassa GN=pep-4 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.470e-13
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = 3
Query:   57 QILNYVNQLCDRLPSPNGESAVDCDNLSSMANGSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 368
            Q+   +N       S NG+  +DC   SS+ + +FT+ G  F L P +Y+LE     +  C+S F   D+  P GPL ILGD F+ +Y++++D G  ++G A A
Sbjct:  295 QLAEMLNAQIGAKKSWNGQFTIDCGKKSSLEDVTFTLAGYNFTLGPEDYILEA----SGSCLSTFMGMDMPAPVGPLAILGDAFLRKYYSIYDLGADTVGIATA 394          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: PEPA_BOVIN (Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.104e-12
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 3
Query:  105 NGESAVDCDNLSSMANGSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 371
            +GE  + C ++ S+ +  FTI G  + + P+ Y+L+   G+   C SGF   D++   G LWILGDVF+ +Y TVFD GN  IG A  A
Sbjct:  288 SGEVVISCSSIDSLPDIVFTINGVQYPVPPSAYILQ-SNGI---CSSGFEGMDISTSSGDLWILGDVFIRQYFTVFDRGNNQIGLAPVA 372          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: PEPA2_MACFU (Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.441e-12
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 3
Query:  105 NGESAVDCDNLSSMANGSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 371
            +GE  V C  +SS+ +  FTI G  + + P+ Y+L+        CISGF   DV    G LWILGDVF+ +Y TVFD  N  +G A  A
Sbjct:  304 DGEMVVSCSAISSLPDIVFTINGIQYPVPPSAYILQS----QGSCISGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: PEPA_MACMU (Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 3
Query:  105 NGESAVDCDNLSSMANGSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 371
            +GE  V C  +SS+ +  FTI G  + L P+ Y+L+        C SGF   DV    G LWILGDVF+ +Y TVFD  N  +G A  A
Sbjct:  304 DGEMVVSCSAISSLPDIVFTINGVQYPLPPSAYILQS----QGSCTSGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: PEPA4_MACFU (Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 3
Query:  105 NGESAVDCDNLSSMANGSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 371
            +GE  V C  +SS+ +  FTI G  + L P+ Y+L+        C SGF   DV    G LWILGDVF+ +Y TVFD  N  +G A  A
Sbjct:  304 DGEMVVSCSAISSLPDIVFTINGVQYPLPPSAYILQS----QGSCTSGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: PEPA_SUNMU (Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 3
Query:  105 NGESAVDCDNLSSMANGSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 371
            NG+  V C ++ S+ +  FTI G  + L  + Y+L+  +     C SGF   D+  P G LWILGDVF+ +Y  VFD GN  +G A  A
Sbjct:  303 NGQMVVSCSSIQSLPDIVFTINGIQYPLPASAYILQNQQ----DCTSGFQGMDIPTPSGELWILGDVFIRQYFAVFDRGNNRVGLAPVA 387          
BLAST of EY702482 vs. ExPASy Swiss-Prot
Match: CATE_CAVPO (Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 3
Query:  117 AVDCDNLSSMANGSFTIGGKVFDLAPNEY-VLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 368
            +V C NL+ M + +F I G  + L P  Y +L+  +G+   C +GF   ++ PP GPLWILGDVF+ +++ VFD GN  +G A A
Sbjct:  306 SVQCANLNMMLDVTFIINGVPYTLNPTAYTLLDFVDGMQV-CSTGFEGLEIQPPAGPLWILGDVFIRQFYAVFDRGNNRVGLAPA 389          
The following BLAST results are available for this feature:
BLAST of EY702482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CATD_SHEEP4.481e-1444.00Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
CATE_RABIT5.852e-1443.18Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ... [more]
PEPA_PIG6.470e-1340.45Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3[more]
CARP_NEUCR6.470e-1335.58Vacuolar protease A OS=Neurospora crassa GN=pep-4 ... [more]
PEPA_BOVIN1.104e-1241.57Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2[more]
PEPA2_MACFU1.441e-1242.70Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1[more]
PEPA_MACMU1.883e-1242.70Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1[more]
PEPA4_MACFU1.883e-1242.70Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
PEPA_SUNMU2.459e-1240.45Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2[more]
CATE_CAVPO2.459e-1242.35Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-E04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702482 ID=EY702482; Name=EY702482; organism=Citrus sinensis; type=EST; length=792bp
ATTCCCTGCACAACCCACGCGTCCGGAACAAGCTGTCGCGAAATGAGACA
GCAGATCAAATCTTGAATTATGTGAATCAGCTTTGTGACCGTCTGCCCAG
TCCAAATGGAGAATCAGCTGTTGATTGTGACAATTTATCTTCCATGGCCA
ATGGTTCATTTACAATTGGTGGCAAAGTATTTGACCTTGCACCAAATGAG
TATGTTCTTGAAGTGGGAGAGGGAGTTGCAGCCCAATGCATCAGTGGATT
TACTGCTTTCGATGTGGCCCCTCCGCGTGGTCCTCTGTGGATTCTGGGAG
ATGTTTTCATGGGTCGCTATCACACTGTGTTCGACTACGGCAACTTGTCT
ATTGGATTCGCCGAAGCAGCTTGAACAAAATCCACTGGCTTCGTCCATTT
CCATAACTAGCTTGTTGTAATAATTATATACACATGCATACATACATATA
TATGTGTATATATGTGTGTGTTTGTGTCTCTGTGTGTGTATTATAATCCA
GTCCAGGATCGGACTTTATTAGAATCCGGAAAGGTTATTAAACCGTGCGG
TTTAGGTTTAATAGCATAATGCCATTCTACTATTAAACCATGTAGTTTGA
TCATTTTCATGGTCATTATACTATTAAACCAAACGGGTTAATAACTTTCC
CAAGCATTAACAAATGCAGGATCCAAAACTAAAACATTTATCTATATATG
CACCATGGTGATANGATATAGACTTATACTAAAACTCATTTGTAAAATAT
TTGCAGGTAATAATGTGTATTTGCCATAAAAAAAAAAAAAAA
back to top