EY702481

Overview
NameEY702481
Unique NameEY702481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.065e-28
Identity = 83/186 (44.62%), Postives = 104/186 (55.91%), Query Frame = 2
Query:  362 EANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            E  N +NG      ++ K+   ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNVMVFQSS  G+ L   G   L        Q+          P  +KV V            +S      ++   E+DKM V+V+K+FFP     G  + RV L +G+GVA L+    GT DAV+ D
Sbjct:    2 EVTNQSNGC----SNNEKESPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLV-IGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVAKEFFP-DVAVGYEDPRVNLHIGDGVAFLKNVPAGTYDAVIVD 181          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: SPD1_ORYSJ (Spermidine synthase 1 OS=Oryza sativa subsp. japonica GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.904e-28
Identity = 79/164 (48.17%), Postives = 95/164 (57.93%), Query Frame = 2
Query:  428 ISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            IS+VIPGWFSEISPMWPGEAHSLKVEK+LFQGKSDYQNVMVFQSS  G+ L   G   +        Q+             +KV V            +S      ++   E+DKM VDVSKQFFP     G  + RV+L +G+GVA L+    GT DAV+ D
Sbjct:   27 ISAVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYGKVLVLDGVIQVTERDECAYQEMITHLPLCSIKDPKKVLV-IGGGDGGVLREVSRHSSVEQIDICEIDKMVVDVSKQFFP-HLAVGFEDPRVSLHIGDGVAFLKNAPEGTYDAVIVD 188          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: PMT1_TOBAC (Putrescine N-methyltransferase 1 OS=Nicotiana tabacum GN=PMT1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.821e-20
Identity = 62/190 (32.63%), Postives = 96/190 (50.53%), Query Frame = 2
Query:  350 DGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            +G +   +      +   + N+      S+ PGWFSE S +WPGEA SLKVEK+LFQGKSDYQ+VM+F+S+  G+ L   G             +  +    G  P  +KV +            +  +    ++   E+D + VDVS++FFP +      + RVTL +G+G A ++A   G  DA++ D
Sbjct:   55 NGHQNGTSEQQNGTISHDNGNELLGSSDSIKPGWFSEFSALWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEML-RYPSIEKIDIVEIDDVVVDVSRKFFP-YLAANFNDPRVTLVLGDGAAFVKAAQAGYYDAIIVD 242          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: PMT3_TOBAC (Putrescine N-methyltransferase 3 OS=Nicotiana tabacum GN=PMT3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.378e-20
Identity = 64/183 (34.97%), Postives = 99/183 (54.10%), Query Frame = 2
Query:  371 NNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            +++NG+ L  + S+      +S+ PGWFSE S +WPGEA SLKVEK+LFQGKSDYQ+VM+F+S+  G+ L   G             +  +    G  P  +KV +            +  +    ++   E+D + VDVS++FFP +      + RVTL +G+G A ++A   G  DA++ D
Sbjct:   74 SHDNGNELQLLGSS------NSIKPGWFSEFSALWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEML-RYPTIEKIDIVEIDDVVVDVSRKFFP-YLAANFSDPRVTLVLGDGAAFVKAAQAGYYDAIIVD 248          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: SPEE_YEAST (Spermidine synthase OS=Saccharomyces cerevisiae GN=SPE3 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.574e-20
Identity = 32/44 (72.73%), Postives = 33/44 (75.00%), Query Frame = 1
Query:  562 TYGKVLILDGVIQLTERDECAYXEMITHLPLWSIPNPKKGLGIG 693
            TYG VL+LD VIQ TERDE AY EMI HL L S PNPKK L IG
Sbjct:   53 TYGNVLVLDNVIQATERDEFAYQEMIAHLALNSHPNPKKVLVIG 96          

HSP 2 Score: 57.3806 bits (137), Expect = 2.574e-20
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 2
Query:  434 SVIPGWFSEISP-MWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFL 580
            +++ GWF EIS  MWPG+A +LKVEK+L   KS YQ+V++F+S+  G  L
Sbjct:    9 TIVDGWFREISDTMWPGQAMTLKVEKVLHHEKSKYQDVLIFKSTTYGNVL 58          

HSP 3 Score: 20.7866 bits (42), Expect = 2.574e-20
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 3
Query:  708 GVLREVSRHSSCGE 749
            GVLREV +H S  E
Sbjct:  101 GVLREVVKHDSVEE 114          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: PMT2_TOBAC (Putrescine N-methyltransferase 2 OS=Nicotiana tabacum GN=PMT2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.434e-19
Identity = 66/207 (31.88%), Postives = 103/207 (49.76%), Query Frame = 2
Query:  326 LPLKRPRDDGEKEANNNNNGSV-----LMEMDSNKQ----PDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            +P+    +   K  N + NG+       + +D+  +     +CI    PGWFSE S +WPGEA SLKVEK+LFQGKSDYQ+VM+F+S+  G+ L   G             +  +    G  P  +KV +            +  +    ++   E+D + VDVS++FFP +      + RVTL +G+G A ++A      DA++ D
Sbjct:   19 IPMNGHHNGTSKHQNGHKNGTSEQQNGTISLDNGNELLGNSNCIK---PGWFSEFSALWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEML-RYPTIEKIDIVEIDDVVVDVSRKFFP-YLAANFNDPRVTLVLGDGAAFVKAAQAEYYDAIIVD 220          
BLAST of EY702481 vs. ExPASy Swiss-Prot
Match: PMT4_TOBAC (Putrescine N-methyltransferase 4 OS=Nicotiana tabacum GN=PMT4 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.226e-18
Identity = 60/190 (31.58%), Postives = 95/190 (50.00%), Query Frame = 2
Query:  350 DGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSHMGRFLFWMG*FSLLRGMNVHXQK*SLTFHFGPFPTRRKVWVXXXXXXXXXXXSISSFFLWRRLISGELDKMGVDVSKQFFP*WTWWGLRNLRVTLQMGEGVAVLEAGS*GTIDAVLGD 919
            +G +   +      +   + N+     +S+  GWFSE S +WPGEA SLKVEK+LFQGKSDYQ+VM+F+S+  G+ L   G             +  +    G  P  +KV +            +  +    ++   E+D + VDVS++ FP +      + RVTL +G+G A ++A   G  DA++ D
Sbjct:   99 NGHQNGTSEQQNGTISHDNGNELLGNSNSIKLGWFSEFSALWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEML-RYPTIEKIDIVEIDDVVVDVSRKSFP-YLAANFNDPRVTLVLGDGAAFVKAAQAGYYDAIIVD 286          
The following BLAST results are available for this feature:
BLAST of EY702481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SPD1_HYONI1.065e-2844.62Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=... [more]
SPD1_ORYSJ6.904e-2848.17Spermidine synthase 1 OS=Oryza sativa subsp. japon... [more]
PMT1_TOBAC1.821e-2032.63Putrescine N-methyltransferase 1 OS=Nicotiana taba... [more]
PMT3_TOBAC2.378e-2034.97Putrescine N-methyltransferase 3 OS=Nicotiana taba... [more]
SPEE_YEAST2.574e-2072.73Spermidine synthase OS=Saccharomyces cerevisiae GN... [more]
PMT2_TOBAC3.434e-1931.88Putrescine N-methyltransferase 2 OS=Nicotiana taba... [more]
PMT4_TOBAC2.226e-1831.58Putrescine N-methyltransferase 4 OS=Nicotiana taba... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-E03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702481 ID=EY702481; Name=EY702481; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGGCGGCAGCAAACGCAAACGCTAACACAAACACGAGCCGC
ATCTTTGCGAAGCCAGATTTGTAACTTTTTATAATATATTCTCCCACCAC
TCGCAGCTTGCAATTTTTTATTTTAATTTTTCTTTTTATATATAAAAGGC
AAAGAGGGACGGAGATTCTGTTTGTGTGGCGCCTCTTGACTCCCGAGAGT
TGCCTCGGCAGTCAGTTTTCATTAGAAGTGAAGTGATTGTTGGGTTTTCG
GGGGTTTGAAAGCAGAAAGAATAATCAATAATAATATCTGTTATGGCGGA
AACTGGGTCTGCTGCTGCCACTGATTTGCCGTTGAAGAGGCCGAGAGATG
ACGGAGAGAAGGAGGCTAATAACAACAATAACGGGAGTGTGTTGATGGAG
ATGGACTCTAACAAACAGCCTGATTGTATCTCCTCTGTTATTCCTGGCTG
GTTCTCTGAAATCAGCCCAATGTGGCCCGGTGAGGCACATTCATTGAAGG
TTGAGAAAATCTTGTTTCAAGGGAAGTCTGATTACCAGAATGTCATGGTC
TTTCAGTCTTCACATATGGGAAGGTTCTTATTTTGGATGGGGTGATTCAG
CTTACTGAGAGGGATGAATGTGCATATNCAGAAATGATCACTCACCTTCC
ACTTTGGTCCATTCCCAACCCGAAGAAAGGTCTGGGTATTGGGTGGAGGA
GATGGTGGGGGTCTTGCGGGAAGTATCTCGTCATTCTTCCTGTGGAGAAG
ATTGATATCTGGGGAATTGGATAAAATGGGAGTTGATGTCTCCAAACAAT
TTTTCCCCTGATGGACCTGGTGGGGTTTGAGGAATCTCCGGGTGACCCTC
CAAATGGGGGAGGGAGTTGCGGTCTTGGAGGCTGGTTCCTGAGGGACTAT
TGATGCGGTTTTAGGGGATC
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