EY702476

Overview
NameEY702476
Unique NameEY702476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHM 139
            FVGD+ SSIFDA AGI+L+   VKL+SWYDNE+GYS RV DL+++M
Sbjct:  286 FVGDTHSSIFDAGAGISLNDNFVKLISWYDNEFGYSHRVADLLMYM 331          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            FVG+  SS+FDA AGI L+   VKL++WYDNE+GYS RVVDL+VH +K
Sbjct:  285 FVGEVCSSVFDAAAGIQLTPTFVKLIAWYDNEYGYSNRVVDLLVHAAK 332          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F G+  +S+FDAKAGIAL+   VKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F G+  +S+FDAKAGIAL+   VKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F G+  +S+FDAKAGIAL+   VKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F G+  +S+FDAKAGIAL+   VKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F G+  +S+FDAKAGIAL+   VKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F G+  +S+FDAKAGIAL+   VKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F G+  +S+FDAKAGIAL+   VKLVSWYDNE GYS +V+DLI H+SK
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMS 142
            F GDS SS FDA+ GI+L+   VKLVSWYDNEWGYS RV DL+ +++
Sbjct:  286 FTGDSASSTFDAQGGISLNGNFVKLVSWYDNEWGYSARVCDLVSYIA 332          
The following BLAST results are available for this feature:
BLAST of EY702476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
G3PT_DANRE1.935e-1167.39Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P1_RHIRA1.935e-1164.58Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P1_SHIFL2.527e-1166.67Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_SALTY2.527e-1166.67Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI2.527e-1166.67Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_ESCF32.527e-1166.67Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOLI2.527e-1166.67Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL62.527e-1166.67Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO572.527e-1166.67Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_PHARH3.301e-1163.83Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-D08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702476 ID=EY702476; Name=EY702476; organism=Citrus sinensis; type=EST; length=570bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAAGTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGTCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGTGCTAAATGTGGTGTTTGTGTTTCTATGTAGAGGG
TCTGAGCTTAAATAAAATTGGTTCCCAGACATTATCCAGAGCCTTACCTG
CTCATGCAGGGGTGGTGCTTAGATTTTCCCCTGTAGTATGCAAGAAGAGT
TGGCGAACCAACTTATGTTTTGGTACCGAGAAAACCAATTGTCCATTGGA
AACTTGCTTTTATAATTTTTCCATCTAGTAAGTATCAAAGACCTGTTCCT
CCAGCTGGTAAAAAAAAAAAAAAAAGGGGCGGCCGCCCTACAAGATCCCA
CCTCTACGGAACCGGGCGATGCCACGCCCTAACCCCTCCACCGGGGGCCC
CTAAACCCAATCCCCTGGGC
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