EY702476

Overview
NameEY702476
Unique NameEY702476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            FV D  S   DAKAGI LS   VKLV+WYDNEWGYS RVVDL +H++K
Sbjct:  288 FVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVAK 335          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMS 142
            +G++ SSIFDAKAGI+L+   VKLV+WYDNEW YS RV+DLI +++
Sbjct:  287 IGNNHSSIFDAKAGISLNDNFVKLVAWYDNEWAYSRRVIDLISYIA 332          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHM 139
            F+ D+ SS+F+ KAGI+L+ K VKL+SWYDNE+GYS RV+DLI +M
Sbjct:  283 FLSDTHSSVFEPKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMS 142
            F+G + SSIFDA+AGIAL+   VKLVSWYDNE+GYS RV DLI +++
Sbjct:  286 FIGSTESSIFDAQAGIALNANFVKLVSWYDNEYGYSRRVCDLISYIA 332          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMS 142
            GD+ S IFDA AGIAL+   +KLV+WYDNEWGYS RV+DLI +++
Sbjct:  287 GDTHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHM 139
            F G+  SSIFDAKAGIAL+   VKLV+WYDNE+GYS RVVDL+ +M
Sbjct:  390 FNGNPHSSIFDAKAGIALNDNFVKLVAWYDNEYGYSNRVVDLLRYM 435          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F  D+ SS FDA AGIAL+   VKL+SWYDNE+GYS RVVDL+ HM+  +
Sbjct:  286 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F  D+ SS FDA AGIAL+   VKL+SWYDNE+GYS RVVDL+ HM+  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 333          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F+ D+ S +FDAKAGI LS   VKL++WYDNEWGYS RV +L+ +++K
Sbjct:  284 FISDNNSCVFDAKAGIQLSPNFVKLIAWYDNEWGYSRRVCNLLQYVAK 331          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F G+  SSIFD  AGIAL+K  VKL+SWYDNEWGYS R  DL+ + +K
Sbjct:  285 FTGNDNSSIFDRDAGIALNKTFVKLISWYDNEWGYSRRCCDLLGYAAK 332          
The following BLAST results are available for this feature:
BLAST of EY702476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
G3PC_CHLRE3.301e-1166.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ERYGR4.311e-1163.04Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_DROHY4.311e-1163.04Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_CRYNE4.311e-1165.96Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_COCIM4.311e-1164.44Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3PT_MOUSE4.311e-1169.57Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_HUMAN5.630e-1162.00Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_FELCA5.630e-1162.00Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P2_AGABI5.630e-1158.33Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P_PHACH7.353e-1162.50Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-D08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702476 ID=EY702476; Name=EY702476; organism=Citrus sinensis; type=EST; length=570bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAAGTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGTCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGTGCTAAATGTGGTGTTTGTGTTTCTATGTAGAGGG
TCTGAGCTTAAATAAAATTGGTTCCCAGACATTATCCAGAGCCTTACCTG
CTCATGCAGGGGTGGTGCTTAGATTTTCCCCTGTAGTATGCAAGAAGAGT
TGGCGAACCAACTTATGTTTTGGTACCGAGAAAACCAATTGTCCATTGGA
AACTTGCTTTTATAATTTTTCCATCTAGTAAGTATCAAAGACCTGTTCCT
CCAGCTGGTAAAAAAAAAAAAAAAAGGGGCGGCCGCCCTACAAGATCCCA
CCTCTACGGAACCGGGCGATGCCACGCCCTAACCCCTCCACCGGGGGCCC
CTAAACCCAATCCCCTGGGC
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