EY702476

Overview
NameEY702476
Unique NameEY702476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMS 142
            GD  S IFDA AGIAL+   +KLV+WYDNEWGYS RV+DLI +++
Sbjct:  287 GDPHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 2
Query:   20 SSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            SS FDA+AGI+L+ + VKLV+WYDNEWGYS RV DL+VH++K
Sbjct:  338 SSTFDAEAGISLNPRFVKLVAWYDNEWGYSNRVKDLMVHVAK 379          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHM 139
            F GD+ SSIFDA AGI L+    K+V+WYDNEWGYS RVVDL++ M
Sbjct:  289 FQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSM 334          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHM 139
            F GD+ SSIFDA AGI L+    K+V+WYDNEWGYS RVVDL++ M
Sbjct:  289 FQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSM 334          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_MUSPF (Glyceraldehyde-3-phosphate dehydrogenase OS=Mustela putorius furo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F  D+ SS FDA AGIAL+   VKL+SWYDNE+GYS RVVDL+V+M+  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F  DS SS FDA AGIAL+   VKL+SWYDNE+GYS RVVDL+ +M+  +
Sbjct:  284 FNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMASKE 333          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F  D+ SS FDA AGIAL+   VKL+SWYDNE+GYS RVVDL+V+M+  +
Sbjct:  284 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333          
The following BLAST results are available for this feature:
BLAST of EY702476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
G3P_COCP77.353e-1164.44Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3PA_GUITH7.353e-1169.05Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P1_ANAVT7.353e-1165.22Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANASP7.353e-1165.22Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_MUSPF9.604e-1162.00Glyceraldehyde-3-phosphate dehydrogenase OS=Mustel... [more]
G3P_CRIGR9.604e-1162.00Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_CANFA9.604e-1162.00Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-D08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702476 ID=EY702476; Name=EY702476; organism=Citrus sinensis; type=EST; length=570bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAAGTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGTCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGTGCTAAATGTGGTGTTTGTGTTTCTATGTAGAGGG
TCTGAGCTTAAATAAAATTGGTTCCCAGACATTATCCAGAGCCTTACCTG
CTCATGCAGGGGTGGTGCTTAGATTTTCCCCTGTAGTATGCAAGAAGAGT
TGGCGAACCAACTTATGTTTTGGTACCGAGAAAACCAATTGTCCATTGGA
AACTTGCTTTTATAATTTTTCCATCTAGTAAGTATCAAAGACCTGTTCCT
CCAGCTGGTAAAAAAAAAAAAAAAAGGGGCGGCCGCCCTACAAGATCCCA
CCTCTACGGAACCGGGCGATGCCACGCCCTAACCCCTCCACCGGGGGCCC
CTAAACCCAATCCCCTGGGC
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