EY702476

Overview
NameEY702476
Unique NameEY702476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMS 142
            F+GD+ S+IFDA AGI LS K VKLV+WYDNE+GYSTRVVDL+ H++
Sbjct:  283 FLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 329          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F GDS SS FDA AGIAL+   VKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  284 FNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F GDS SS FDA AGIAL+   VKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  284 FNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F GD+ SSIFDA AGIAL++  VKLVSWYDNE GYS RVVDL+ HM+  +
Sbjct:  284 FNGDTHSSIFDADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F+G+S SSIFDA AGI+L+   VKLVSWYDNEWGYS R +DL+V M++
Sbjct:  286 FIGNSHSSIFDAAAGISLNNNFVKLVSWYDNEWGYSNRCLDLLVFMAQ 333          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F G++ SSIFDA AGIAL+K  VKL++WYDNEWGYS RVVDLI  +++
Sbjct:  285 FTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVAQ 332          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F GDS SS FDA AGIAL+   VKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  284 FNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSK 145
            F+GD+ +SIFDA AGI LS K VKL+SWYDNE+GYS RVVDLI +++K
Sbjct:  284 FLGDTHASIFDASAGIQLSPKFVKLISWYDNEYGYSARVVDLIEYVAK 331          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVH 136
            F GD+ SSIFDA AGI LS + VKLVSWYDNEWGYS RVVDL+ +
Sbjct:  286 FCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAY 330          
BLAST of EY702476 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKVVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 151
            F GDS SS FDA AGIAL+   VKLVSWYDNE+GYS RVVDL+VHM+  +
Sbjct:  314 FNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 363          
The following BLAST results are available for this feature:
BLAST of EY702476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
G3P1_KLUMA7.857e-1370.21Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_COTJA1.026e-1270.00Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_COLLI1.026e-1270.00Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P_XENLA1.340e-1268.00Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_USTMA1.340e-1266.67Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_OMPOL1.340e-1266.67Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_CHICK1.340e-1270.00Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P1_YEAST1.340e-1268.75Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P1_SCHPO1.340e-1273.33Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P1_JACOR1.340e-1270.00Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-D08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702476 ID=EY702476; Name=EY702476; organism=Citrus sinensis; type=EST; length=570bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAAGTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGTCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGTGCTAAATGTGGTGTTTGTGTTTCTATGTAGAGGG
TCTGAGCTTAAATAAAATTGGTTCCCAGACATTATCCAGAGCCTTACCTG
CTCATGCAGGGGTGGTGCTTAGATTTTCCCCTGTAGTATGCAAGAAGAGT
TGGCGAACCAACTTATGTTTTGGTACCGAGAAAACCAATTGTCCATTGGA
AACTTGCTTTTATAATTTTTCCATCTAGTAAGTATCAAAGACCTGTTCCT
CCAGCTGGTAAAAAAAAAAAAAAAAGGGGCGGCCGCCCTACAAGATCCCA
CCTCTACGGAACCGGGCGATGCCACGCCCTAACCCCTCCACCGGGGGCCC
CTAAACCCAATCCCCTGGGC
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