CX301094

Overview
NameCX301094
Unique NameCX301094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301094 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.153e-13
Identity = 46/150 (30.67%), Postives = 76/150 (50.67%), Query Frame = 2
Query:    2 ETWP-----QDPLLPQDPYERAMARFWAKFADEKLMQTAWKSTW---TKGEEKEDALKATMEALEKIEGEL----KGKSYFGGENKYAYLEIAIGWINYLIPIWEEIASIQFLDPKRFPAITAWKSKFLDNPLIKETLPPREKLLIYLHQ 415
            E WP     +  ++P DPYERA+ARFWA + D+K ++ AW +        EE+  A+   + ALE +EG      KGK +FGG+    ++++ +G         +++   + +DP R PA+ AW+ +F      K  +P     L+   Q
Sbjct:   78 EVWPGGAGGRPSVMPSDPYERAVARFWAAYVDDK-VRPAWLAILFGSKTEEERAAAVAQAVAALETLEGAFGECSKGKPFFGGDG-VGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPDDADKLLEFRQ 225          
BLAST of CX301094 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.764e-13
Identity = 38/134 (28.36%), Postives = 72/134 (53.73%), Query Frame = 2
Query:    2 ETW-PQDPLLPQDPYERAMARFWAKFADEKLMQTAWKSTW-TKGEEKEDALKATMEALEKIEGELKGKSYFGGENKYAYLEIAIGWINYLIPIWEEIASIQFLDPKRFPAITAWKSKFLDNPLIKETLPPREKL 397
            E W  + PL+P DPY+R+ ARFW  + D+K+  T WK  W +KGEE E+  K  +   +++E  L  K ++ G++ + ++++ +   +     +E   +  F   +  P + AW  + ++   +  TLP  +K+
Sbjct:   76 EVWNDKSPLMPSDPYKRSQARFWVDYIDKKIYDT-WKKMWLSKGEEHEEGKKELISIFKQLEETLTDKPFY-GDDTFGFVDLCLITFSSWFYTYETYGN--FKMEEECPKLMAWVKRCMERETVSNTLPDAKKV 205          
The following BLAST results are available for this feature:
BLAST of CX301094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GSTU6_ORYSJ1.153e-1330.67Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTX3_SOYBN9.764e-1328.36Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]

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Properties
Property NameValue
Genbank descriptionC08005F10SK PhyRootSw1 Citrus sinensis cDNA clone C08005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301094 ID=CX301094; Name=CX301094; organism=Citrus sinensis; type=EST; length=634bp
TGAGACATGGCCACAAGATCCGTTGCTGCCTCAAGATCCTTATGAAAGAG
CCATGGCTCGATTTTGGGCTAAATTTGCAGATGAAAAGCTGATGCAAACT
GCATGGAAGTCAACGTGGACCAAAGGAGAGGAAAAAGAGGATGCTCTGAA
AGCAACAATGGAAGCTTTGGAGAAGATAGAGGGAGAACTCAAAGGAAAAA
GCTACTTTGGAGGAGAGAACAAATATGCGTATTTGGAAATTGCAATTGGA
TGGATCAATTACCTTATACCAATTTGGGAAGAAATTGCATCCATTCAATT
TCTTGACCCGAAAAGATTTCCAGCCATTACTGCATGGAAAAGCAAGTTTC
TGGATAACCCTTTGATCAAAGAAACCCTGCCACCGAGGGAGAAATTGCTT
ATCTATTTGCACCAGCGCGTCAAACATCGGGAGATTGACGCTACAATCCG
TGAACTGGCGGAGACCAAACTTGAAAATTAATTAATTAATCGAATTATCA
TCTCTGCACGTGTCTCCTTTTTGTACGCTCTGTATGATTTCTTTGTTTTT
TATTATTGCAAGTACTTTGGGTCAAGTTGAATCTGTATTGAGAAAATAAA
GAAGAGTTATGACATATGTATTATACTTTGACGG
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