CX301069

Overview
NameCX301069
Unique NameCX301069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 80/195 (41.03%), Postives = 102/195 (52.31%), Query Frame = 1
Query:    1 VPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            V +G+Y + Q++Y+ N+L +RGPRRM+C +              P   E     L+  FR  + +                                +L+NK PRWHE LQCWCLNF GRVTVASVKNFQL+                  + + ++LQFGKV  ++FTMDYR PLSAFQAFAI LSSF TKLACE
Sbjct:  211 VSAGNYEVGQVSYKYNLLKSRGPRRMYCALEC------------PSTQETWENCLKTKFRKPTGNT-------------------------------VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLV------AAADPNDPASSKDEETVLLQFGKVDDNIFTMDYRQPLSAFQAFAISLSSFGTKLACE 356          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 78/194 (40.21%), Postives = 98/194 (50.52%), Query Frame = 1
Query:    1 VPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDK-IILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLA 579
            V +G   + +++Y+ ++L  RGPRRM C +       +  G +V  Q                  K L +S+  S                     L+L +K P WHE LQCWCLNF GRV VASVKNFQLI                    DK ++LQFGK+  D+FTMDYR PLSAFQAFAICLS+F TKLA
Sbjct:  227 VSTGDVEVGEVSYKYSLLRPRGPRRMSCSVQC----PVLKGTAVDPQD----------------GKRLSNSIPSS---------------------LVLNSKVPSWHEHLQCWCLNFHGRVMVASVKNFQLIAPVEPGEPS-----------DKTVVLQFGKIDDDVFTMDYRQPLSAFQAFAICLSNFGTKLA 368          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TULP1_MOUSE (Tubby-related protein 1 OS=Mus musculus GN=Tulp1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25
Identity = 77/188 (40.96%), Postives = 97/188 (51.60%), Query Frame = 1
Query:   22 IAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            +A + YE NVLG RGPRRM  I   IP  + D    VP    + PR+  D       +K+L+  ++                         L NKPP W+E    + LNF+GRVT ASVKNFQ++                  + D I+LQFG+V +D FT+DYRYPL A QAFAI LSSFD KLACE
Sbjct:  404 LAAVVYETNVLGFRGPRRMTVI---IPGMNSD-NERVP----IRPRNASDGLLVRWQNKTLESLIE-------------------------LHNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHAD---------------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 543          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TULP1_HUMAN (Tubby-related protein 1 OS=Homo sapiens GN=TULP1 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 5.015e-25
Identity = 75/195 (38.46%), Postives = 98/195 (50.26%), Query Frame = 1
Query:    1 VPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            V S    +A + YE NVLG RGPRRM  I+  + A +  V         + PR+  D       +K+L+  ++                         L NKPP W++    + LNF+GRVT ASVKNFQ++                  + D I+LQFG+V +D FT+DYRYPL A QAFAI LSSFD KLACE
Sbjct:  396 VASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERV--------PIRPRNASDGLLVRWQNKTLESLIE-------------------------LHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHAD---------------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 542          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TULP3_HUMAN (Tubby-related protein 3 OS=Homo sapiens GN=TULP3 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.235e-23
Identity = 72/188 (38.30%), Postives = 100/188 (53.19%), Query Frame = 1
Query:   22 IAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            +A I+YE NVLG +GPR+M  I   IP  +++    +P QP+    +  DS  S   ++++++ V+                         L NK P W+   Q + LNFRGRVT ASVKNFQ++                  + D I++QFG+V  D+FT+DY YPL A QAF I LSSFD+KLACE
Sbjct:  303 LAAISYETNVLGFKGPRKMSVI---IPGMTLN-HKQIPYQPQ----NNHDSLLSRWQNRTMENLVE-------------------------LHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQIVHKN---------------DPDYIVMQFGRVADDVFTLDYNYPLCAVQAFGIGLSSFDSKLACE 442          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TUB_HUMAN (Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.235e-23
Identity = 69/188 (36.70%), Postives = 99/188 (52.66%), Query Frame = 1
Query:   22 IAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            +A + YE NVLG +GPR+M  I   +P  ++     V  +  + PR+  ++  +   +K+ +  ++                         L+NK P W++  Q + LNF GRVT ASVKNFQ+I                  + D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE
Sbjct:  367 LAAVCYETNVLGFKGPRKMSVI---VPGMNM-----VHERVSIRPRNEHETLLARWQNKNTESIIE-------------------------LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGN---------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 506          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TULP3_MOUSE (Tubby-related protein 3 OS=Mus musculus GN=Tulp3 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.613e-23
Identity = 72/188 (38.30%), Postives = 100/188 (53.19%), Query Frame = 1
Query:   22 IAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            +A I YE NVLG +GPR+M  I   IP  +++    +P +P    R+  +S  S   +KS+++ ++                         L NK P W++  Q + LNF GRVT ASVKNFQ++                  + D I++QFG+V  D+FT+DY YPL A QAFAI LSSFD+KLACE
Sbjct:  321 LAAICYETNVLGFKGPRKMSVI---IPGMNMN-HERIPFRP----RNEHESLLSKWQNKSMENLIE-------------------------LHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQIVHGN---------------DPDYIVMQFGRVADDVFTLDYNYPLCALQAFAIGLSSFDSKLACE 460          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TUB_RAT (Tubby protein homolog OS=Rattus norvegicus GN=Tub PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 69/188 (36.70%), Postives = 99/188 (52.66%), Query Frame = 1
Query:   22 IAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            +A + YE NVLG +GPR+M  I   +P  ++     V  +  + PR+  ++  +   +K+ +  ++                         L+NK P W++  Q + LNF GRVT ASVKNFQ+I                  + D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE
Sbjct:  366 LAAVCYETNVLGFKGPRKMSVI---VPGMNM-----VHERVCIRPRNEHETLLARWQNKNTESIIE-------------------------LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGN---------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TUB_MOUSE (Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 69/188 (36.70%), Postives = 99/188 (52.66%), Query Frame = 1
Query:   22 IAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            +A + YE NVLG +GPR+M  I   +P  ++     V  +  + PR+  ++  +   +K+ +  ++                         L+NK P W++  Q + LNF GRVT ASVKNFQ+I                  + D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE
Sbjct:  366 LAAVCYETNVLGFKGPRKMSVI---VPGMNM-----VHERVCIRPRNEHETLLARWQNKNTESIIE-------------------------LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGN---------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505          
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TUB1_CAEEL (Tubby protein homolog 1 OS=Caenorhabditis elegans GN=tub-1 PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 67/189 (35.45%), Postives = 96/189 (50.79%), Query Frame = 1
Query:   22 IAQIAYELNVLGTRGPRRMHCIMHSI-PASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585
            +A + YE NVLG +GPR+M  +M  I P +        P +P     +L + +R                   +++ +L+           IL NK P+W+++ Q + LNF GRVT ASVKNFQ+I                    + I++QFG++  D FTMD+RYPLSA QAF I ++SF  KLACE
Sbjct:  282 LAAVIYETNVLGFKGPRKMTIVMPGIEPPTENRPAVRCPVRPIQDKHTLLERYR------------------LNDLDSLK-----------ILSNKSPQWNDETQSYVLNFHGRVTQASVKNFQIIHQSSP---------------EYIVMQFGRISDDEFTMDFRYPLSAVQAFGIAMTSFHGKLACE 426          
The following BLAST results are available for this feature:
BLAST of CX301069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
TLP1_ORYSJ8.535e-3341.03Tubby-like F-box protein 1 OS=Oryza sativa subsp. ... [more]
TLP2_ORYSJ3.141e-2740.21Tubby-like F-box protein 2 OS=Oryza sativa subsp. ... [more]
TULP1_MOUSE2.940e-2540.96Tubby-related protein 1 OS=Mus musculus GN=Tulp1 P... [more]
TULP1_HUMAN5.015e-2538.46Tubby-related protein 1 OS=Homo sapiens GN=TULP1 P... [more]
TULP3_HUMAN1.235e-2338.30Tubby-related protein 3 OS=Homo sapiens GN=TULP3 P... [more]
TUB_HUMAN1.235e-2336.70Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 ... [more]
TULP3_MOUSE1.613e-2338.30Tubby-related protein 3 OS=Mus musculus GN=Tulp3 P... [more]
TUB_RAT3.594e-2336.70Tubby protein homolog OS=Rattus norvegicus GN=Tub ... [more]
TUB_MOUSE3.594e-2336.70Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1[more]
TUB1_CAEEL5.190e-2235.45Tubby protein homolog 1 OS=Caenorhabditis elegans ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08005D08SK PhyRootSw1 Citrus sinensis cDNA clone C08005D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301069 ID=CX301069; Name=CX301069; organism=Citrus sinensis; type=EST; length=736bp
GTCCCAAGTGGCAGCTATAATATAGCCCAAATAGCTTATGAACTCAATGT
GCTTGGCACACGAGGCCCCAGAAGGATGCACTGCATCATGCACTCAATCC
CAGCCTCATCAATTGATGTAGGTGGCTCTGTTCCTGGCCAGCCAGAGCTT
CTTCCCCGCTCTCTTGAGGACTCATTCCGGAGCATCTCCTTCTCAAAATC
ACTGGATCACTCTGTTGACTTCAGCAGCGCACGCTTTTCTGAAATTGGTG
CGCTCAGAGAGGATGATGAGGATGGCAAAGTGAGACCCTTGATCCTCAAA
AACAAGCCCCCAAGATGGCATGAACAATTACAGTGTTGGTGTCTCAATTT
TCGGGGGCGGGTGACTGTCGCATCTGTTAAGAATTTTCAGTTGATTGCAG
CTACACAACCAGCTGCTGGTGCACCCACTCCCTCTCAACCAGCGCCACCT
GAACATGATAAGATCATTCTCCAGTTTGGCAAGGTTGGGAAAGATATGTT
TACTATGGACTATCGATATCCACTCTCTGCATTTCAGGCGTTTGCTATTT
GCTTGAGCAGCTTTGACACCAAACTGGCCTGTGAATAGAACAATAAATGA
TAGATATCAAAAGTCTGGTGGACTGCGACATCTTTTTTCCCCATTTTTCT
TTGTAATTTGTTTCCTATACGTTCAGTGCAGGATAGGGAATTGCTGTTAA
TGTTATTCGTTTATTGTAAAATCTCAATTGTAACTC
back to top