CX301069
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 8.535e-33 Identity = 80/195 (41.03%), Postives = 102/195 (52.31%), Query Frame = 1 Query: 1 VPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585 V +G+Y + Q++Y+ N+L +RGPRRM+C + P E L+ FR + + +L+NK PRWHE LQCWCLNF GRVTVASVKNFQL+ + + ++LQFGKV ++FTMDYR PLSAFQAFAI LSSF TKLACE Sbjct: 211 VSAGNYEVGQVSYKYNLLKSRGPRRMYCALEC------------PSTQETWENCLKTKFRKPTGNT-------------------------------VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLV------AAADPNDPASSKDEETVLLQFGKVDDNIFTMDYRQPLSAFQAFAISLSSFGTKLACE 356
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27 Identity = 78/194 (40.21%), Postives = 98/194 (50.52%), Query Frame = 1 Query: 1 VPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDK-IILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLA 579 V +G + +++Y+ ++L RGPRRM C + + G +V Q K L +S+ S L+L +K P WHE LQCWCLNF GRV VASVKNFQLI DK ++LQFGK+ D+FTMDYR PLSAFQAFAICLS+F TKLA Sbjct: 227 VSTGDVEVGEVSYKYSLLRPRGPRRMSCSVQC----PVLKGTAVDPQD----------------GKRLSNSIPSS---------------------LVLNSKVPSWHEHLQCWCLNFHGRVMVASVKNFQLIAPVEPGEPS-----------DKTVVLQFGKIDDDVFTMDYRQPLSAFQAFAICLSNFGTKLA 368
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TULP1_MOUSE (Tubby-related protein 1 OS=Mus musculus GN=Tulp1 PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25 Identity = 77/188 (40.96%), Postives = 97/188 (51.60%), Query Frame = 1 Query: 22 IAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585 +A + YE NVLG RGPRRM I IP + D VP + PR+ D +K+L+ ++ L NKPP W+E + LNF+GRVT ASVKNFQ++ + D I+LQFG+V +D FT+DYRYPL A QAFAI LSSFD KLACE Sbjct: 404 LAAVVYETNVLGFRGPRRMTVI---IPGMNSD-NERVP----IRPRNASDGLLVRWQNKTLESLIE-------------------------LHNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHAD---------------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 543
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TULP1_HUMAN (Tubby-related protein 1 OS=Homo sapiens GN=TULP1 PE=1 SV=3) HSP 1 Score: 114.775 bits (286), Expect = 5.015e-25 Identity = 75/195 (38.46%), Postives = 98/195 (50.26%), Query Frame = 1 Query: 1 VPSGSYNIAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585 V S +A + YE NVLG RGPRRM I+ + A + V + PR+ D +K+L+ ++ L NKPP W++ + LNF+GRVT ASVKNFQ++ + D I+LQFG+V +D FT+DYRYPL A QAFAI LSSFD KLACE Sbjct: 396 VASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERV--------PIRPRNASDGLLVRWQNKTLESLIE-------------------------LHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHAD---------------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 542
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TULP3_HUMAN (Tubby-related protein 3 OS=Homo sapiens GN=TULP3 PE=1 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.235e-23 Identity = 72/188 (38.30%), Postives = 100/188 (53.19%), Query Frame = 1 Query: 22 IAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585 +A I+YE NVLG +GPR+M I IP +++ +P QP+ + DS S ++++++ V+ L NK P W+ Q + LNFRGRVT ASVKNFQ++ + D I++QFG+V D+FT+DY YPL A QAF I LSSFD+KLACE Sbjct: 303 LAAISYETNVLGFKGPRKMSVI---IPGMTLN-HKQIPYQPQ----NNHDSLLSRWQNRTMENLVE-------------------------LHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQIVHKN---------------DPDYIVMQFGRVADDVFTLDYNYPLCAVQAFGIGLSSFDSKLACE 442
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TUB_HUMAN (Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.235e-23 Identity = 69/188 (36.70%), Postives = 99/188 (52.66%), Query Frame = 1 Query: 22 IAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585 +A + YE NVLG +GPR+M I +P ++ V + + PR+ ++ + +K+ + ++ L+NK P W++ Q + LNF GRVT ASVKNFQ+I + D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE Sbjct: 367 LAAVCYETNVLGFKGPRKMSVI---VPGMNM-----VHERVSIRPRNEHETLLARWQNKNTESIIE-------------------------LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGN---------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 506
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TULP3_MOUSE (Tubby-related protein 3 OS=Mus musculus GN=Tulp3 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.613e-23 Identity = 72/188 (38.30%), Postives = 100/188 (53.19%), Query Frame = 1 Query: 22 IAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585 +A I YE NVLG +GPR+M I IP +++ +P +P R+ +S S +KS+++ ++ L NK P W++ Q + LNF GRVT ASVKNFQ++ + D I++QFG+V D+FT+DY YPL A QAFAI LSSFD+KLACE Sbjct: 321 LAAICYETNVLGFKGPRKMSVI---IPGMNMN-HERIPFRP----RNEHESLLSKWQNKSMENLIE-------------------------LHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQIVHGN---------------DPDYIVMQFGRVADDVFTLDYNYPLCALQAFAIGLSSFDSKLACE 460
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TUB_RAT (Tubby protein homolog OS=Rattus norvegicus GN=Tub PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23 Identity = 69/188 (36.70%), Postives = 99/188 (52.66%), Query Frame = 1 Query: 22 IAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585 +A + YE NVLG +GPR+M I +P ++ V + + PR+ ++ + +K+ + ++ L+NK P W++ Q + LNF GRVT ASVKNFQ+I + D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE Sbjct: 366 LAAVCYETNVLGFKGPRKMSVI---VPGMNM-----VHERVCIRPRNEHETLLARWQNKNTESIIE-------------------------LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGN---------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TUB_MOUSE (Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23 Identity = 69/188 (36.70%), Postives = 99/188 (52.66%), Query Frame = 1 Query: 22 IAQIAYELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585 +A + YE NVLG +GPR+M I +P ++ V + + PR+ ++ + +K+ + ++ L+NK P W++ Q + LNF GRVT ASVKNFQ+I + D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE Sbjct: 366 LAAVCYETNVLGFKGPRKMSVI---VPGMNM-----VHERVCIRPRNEHETLLARWQNKNTESIIE-------------------------LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGN---------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505
BLAST of CX301069 vs. ExPASy Swiss-Prot
Match: TUB1_CAEEL (Tubby protein homolog 1 OS=Caenorhabditis elegans GN=tub-1 PE=1 SV=3) HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22 Identity = 67/189 (35.45%), Postives = 96/189 (50.79%), Query Frame = 1 Query: 22 IAQIAYELNVLGTRGPRRMHCIMHSI-PASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKVRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 585 +A + YE NVLG +GPR+M +M I P + P +P +L + +R +++ +L+ IL NK P+W+++ Q + LNF GRVT ASVKNFQ+I + I++QFG++ D FTMD+RYPLSA QAF I ++SF KLACE Sbjct: 282 LAAVIYETNVLGFKGPRKMTIVMPGIEPPTENRPAVRCPVRPIQDKHTLLERYR------------------LNDLDSLK-----------ILSNKSPQWNDETQSYVLNFHGRVTQASVKNFQIIHQSSP---------------EYIVMQFGRISDDEFTMDFRYPLSAVQAFGIAMTSFHGKLACE 426 The following BLAST results are available for this feature:
BLAST of CX301069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 33
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Sequences
The
following sequences are available for this feature:
EST sequence >CX301069 ID=CX301069; Name=CX301069; organism=Citrus sinensis; type=EST; length=736bpback to top |