CX301067

Overview
NameCX301067
Unique NameCX301067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_PELLD (Chaperone protein dnaJ OS=Pelodictyon luteolum (strain DSM 273) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 40/94 (42.55%), Postives = 61/94 (64.89%), Query Frame = -2
Query:  429 PDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEEL 710
            P  +  R+G +++Y+  VS+ D +LGT + VPT++G V L IPAGTQP T L +   G+  L  S  +GDQ VRV V +PK L+ +++ L+ +L
Sbjct:  262 PHELFVRNGDDVIYSLAVSFPDLVLGTKVDVPTLEGAVKLTIPAGTQPETMLRIPGHGIGHLRGSG-KGDQYVRVNVYVPKELTQQDKDLLRDL 354          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSL (Chaperone protein dnaJ OS=Geobacter sulfurreducens GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = -2
Query:  417 PVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLS 704
            P+  R+  ++L    VS++ A LG  I+VPT+DG V +KIP GTQ      +  KGVP L +   RGDQLV ++VE P  L+  +R+L+EE A +S
Sbjct:  259 PIFTREDNDVLCEIPVSFVQAALGCEIEVPTLDGKVSMKIPEGTQSGRIFRLRGKGVPQL-QGYGRGDQLVIIKVETPSNLNKRQRELLEEFARIS 353          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_PSYIN (Chaperone protein dnaJ OS=Psychromonas ingrahamii (strain 37) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = -2
Query:  393 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGKTASRR 716
            V+P  V +RDG N+     +S+ +A LG+ I+VPT+DG V LKIPA TQ      M  KGV  + +S+  GD + +V VE P +LSS++R L++E   L    +   +
Sbjct:  252 VLPHHVFERDGNNLHCEVPISFTEAALGSEIEVPTLDGRVKLKIPAETQTGRVFRMRNKGVKSV-RSHATGDLMCKVMVETPVKLSSKQRDLLKEFETLCSSSSTKHK 358          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_OPITP (Chaperone protein dnaJ OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = -2
Query:  417 VLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLS 701
            + +R G ++     + +  A LG TI+VPT+ G   LKIP GTQ  TT  +  KG+P L +   +GDQLVRV VE+P+ L+ E+RK++E+ A +S
Sbjct:  270 LFERQGDDLFCEIPIKFTLATLGGTIEVPTLFGKASLKIPVGTQSGTTFRLRDKGMPSL-RGGRQGDQLVRVHVEVPQSLTPEQRKILEDFARVS 363          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMO (Chaperone protein dnaJ OS=Listeria monocytogenes GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  408 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGK 716
            VIPD   +R+  +I     ++++ A LG  I VPTV G V LKIP+GTQ  TT  +  KGVP L + N  GDQ V V+V +PK+L  ++++++ E A  +  K
Sbjct:  257 VIPDEFFEREADDIYVEVPITFVQATLGDEIDVPTVHGKVRLKIPSGTQTGTTFRLRGKGVPHL-RGNGTGDQHVIVKVIVPKKLDDKQKEILREFASTTGDK 358          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMH (Chaperone protein dnaJ OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  408 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGK 716
            VIPD   +R+  +I     ++++ A LG  I VPTV G V LKIP+GTQ  TT  +  KGVP L + N  GDQ V V+V +PK+L  ++++++ E A  +  K
Sbjct:  256 VIPDEFFEREADDIYVEVPITFVQATLGDEIDVPTVHGKVRLKIPSGTQTGTTFRLRGKGVPHL-RGNGTGDQHVIVKVIVPKKLDDKQKEILREFASTTGDK 357          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMF (Chaperone protein dnaJ OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  408 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGK 716
            VIPD   +R+  +I     ++++ A LG  I VPTV G V LKIP+GTQ  TT  +  KGVP L + N  GDQ V V+V +PK+L  ++++++ E A  +  K
Sbjct:  256 VIPDEFFEREADDIYVEVPITFVQATLGDEIDVPTVHGKVRLKIPSGTQTGTTFRLRGKGVPHL-RGNGTGDQHVIVKVIVPKKLDDKQKEILREFASTTGDK 357          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMC (Chaperone protein dnaJ OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  408 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGK 716
            VIPD   +R+  +I     ++++ A LG  I VPTV G V LKIP+GTQ  TT  +  KGVP L + N  GDQ V V+V +PK+L  ++++++ E A  +  K
Sbjct:  256 VIPDEFFEREADDIYVEVPITFVQATLGDEIDVPTVHGKVRLKIPSGTQTGTTFRLRGKGVPHL-RGNGTGDQHVIVKVIVPKKLDDKQKEILREFASTTGDK 357          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_LISIN (Chaperone protein dnaJ OS=Listeria innocua GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  408 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGK 716
            VIPD   +R+  +I     ++++ A LG  I VPTV G V LKIP+GTQ  TT  +  KGVP L + N  GDQ V V+V +PK+L  ++++++ E A  +  K
Sbjct:  256 VIPDEFFEREADDIYVEVPITFVQATLGDEIDVPTVHGKVRLKIPSGTQTGTTFRLRGKGVPHL-RGNGTGDQHVIVKVIVPKKLDDKQKEILREFASTTGDK 357          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_BACHD (Chaperone protein dnaJ OS=Bacillus halodurans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 43/103 (41.75%), Postives = 66/103 (64.08%), Query Frame = -2
Query:  408 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGK 716
            V P    +RDG +I     ++++   LG  I+VPT++G V LKIPAGTQ  T+  +  KGVP ++    +GDQ V+V+V  PK+LS +E++L+ E A +S G+
Sbjct:  251 VKPHEFFERDGDDIYCEMPLTFVQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKGVPNVH-GRGQGDQHVQVRVITPKQLSEKEKELLREFAQMSGGR 352          
The following BLAST results are available for this feature:
BLAST of CX301067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 297
Match NameE-valueIdentityDescription
DNAJ_PELLD9.921e-1542.55Chaperone protein dnaJ OS=Pelodictyon luteolum (st... [more]
DNAJ_GEOSL9.921e-1543.75Chaperone protein dnaJ OS=Geobacter sulfurreducens... [more]
DNAJ_PSYIN1.296e-1439.81Chaperone protein dnaJ OS=Psychromonas ingrahamii ... [more]
DNAJ_OPITP1.296e-1443.16Chaperone protein dnaJ OS=Opitutus terrae (strain ... [more]
DNAJ_LISMO1.296e-1441.75Chaperone protein dnaJ OS=Listeria monocytogenes G... [more]
DNAJ_LISMH1.296e-1441.75Chaperone protein dnaJ OS=Listeria monocytogenes s... [more]
DNAJ_LISMF1.296e-1441.75Chaperone protein dnaJ OS=Listeria monocytogenes s... [more]
DNAJ_LISMC1.296e-1441.75Chaperone protein dnaJ OS=Listeria monocytogenes s... [more]
DNAJ_LISIN1.296e-1441.75Chaperone protein dnaJ OS=Listeria innocua GN=dnaJ... [more]
DNAJ_BACHD1.296e-1441.75Chaperone protein dnaJ OS=Bacillus halodurans GN=d... [more]

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Properties
Property NameValue
Genbank descriptionC08005D05SK PhyRootSw1 Citrus sinensis cDNA clone C08005D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301067 ID=CX301067; Name=CX301067; organism=Citrus sinensis; type=EST; length=717bp
GAATTCGGCACGAGGTTTTTTTTTTTTTTTTGCAAAATTAAAGGATGGTA
TTATTGCACAAAATCTAGTCACACTCCAAAAAATAATTAATAGGTAACTT
ATGAAATCAAGTAGAAAACAAAATTAAAGAGGGATGCATCTCCCATTTCA
CCTCCATTAACCATTCTCAAAGATATCTTCTTGTGGTCAAAAGTATAGCA
ATGTAATTTCACCTACTACTACAGAAACTTGCTTACCCCATTTCCTCAGC
TCAGACACACTGAGAACTGTCAAATTCAGAAATCCCCTTATCATAAGCCA
TATAGACTCAGCAATGACCGCCATAGAATGAAGAATGTTTCTTCGGGGTG
AGCAACATAAATTTGATAAACATAAAAAGGCCCAAGCAACTATCTCCTGC
TTGCTGTCTTTCCCTTGCTCAGATCAGCAAGCTCCTCAATAAGTTTTCTC
TCTTCACTGCTCAATCTTTTCGGGATTTCAACTTGGACGCGTACCAACTG
ATCTCCTCTCATGTTGCTTTTATTTAGTACTGGTACCCCTTTCTTTGCCA
TAACAAGTGTTGTGTTCGGCTGGGTCCCAGCTGGGATCTTCAAATCAACC
ATGCCATCCACTGTTGGGACCTTTATGGTAGTCCCCAAAATTGCATCTAT
ATATGACACTTTGCAGGTATATAAAATGTTGGTACCATCACGTTTTAGCA
CAGGGTCTGGGATAACT
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