CX301067

Overview
NameCX301067
Unique NameCX301067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_BACFR (Chaperone protein dnaJ OS=Bacteroides fragilis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = -2
Query:  399 PDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGKTAS 710
            P P L RD  +++Y   +S+  A +G  +++PT+DG V +KI AGTQP   L +  KG+P +N     GD LV V V +P+ LS EE+  +E+L +    K ++
Sbjct:  277 PHPELIRDENDLVYNLLLSFPTAAIGGAVEIPTIDGKVKVKIEAGTQPGKVLRLRGKGLPSVNGYG-TGDLLVNVSVYVPETLSKEEKSTLEKLEESKNFKPST 379          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_BACFN (Chaperone protein dnaJ OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = -2
Query:  399 PDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGKTAS 710
            P P L RD  +++Y   +S+  A +G  +++PT+DG V +KI AGTQP   L +  KG+P +N     GD LV V V +P+ LS EE+  +E+L +    K ++
Sbjct:  277 PHPELIRDENDLVYNLLLSFPTAAIGGAVEIPTIDGKVKVKIEAGTQPGKVLRLRGKGLPSVNGYG-TGDLLVNVSVYVPETLSKEEKSTLEKLEESKNFKPST 379          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_ACTSZ (Chaperone protein dnaJ OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = -2
Query:  396 VLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGKTASR 701
            + +RDG N+     +S+  A LG  I+VPT+DG   LKIP GTQ  T   M  KG+  + +S   GD + ++ VE P +L+ E++ L+ +L    +GKT  R
Sbjct:  258 IFERDGNNLYCEVPISFTQAALGGEIEVPTLDGRAKLKIPEGTQTGTMFRMRGKGITAM-RSGYSGDLICKITVETPVKLTDEQKDLLHKLEASLEGKTTQR 358          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_THEAB (Chaperone protein dnaJ OS=Thermosipho africanus (strain TCF52B) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 38/97 (39.18%), Postives = 68/97 (70.10%), Query Frame = -2
Query:  408 KRDGTNILYTCKVSYIDAILGTTIKVPTVDGMV-DLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGK 695
            +R G +++   K+ Y++AILGT +K+   DG V ++KIP+G Q    + +  +GVP + ++  RGD +++++V+IPKR+S  E+KL++E+A L +GK
Sbjct:  279 ERRGNDLIKEIKIDYVEAILGTKVKIKMPDGRVKEVKIPSGVQDGENIYVYGEGVPDM-RTGRRGDLILKIKVDIPKRVSRSEKKLLKEIAKL-RGK 373          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNFM (Chaperone protein dnaJ OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = -2
Query:  396 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGKTASR 716
            V P    +RDG N+     VS+  AILG  I++PT+DG  +LKI  GTQP   +  + +GVP L +   RGD  + V+V+IP R++  + +++ E   + K K+  +
Sbjct:  253 VNPHEFFERDGDNLYCKVSVSFAQAILGDQIEIPTLDGGRELKIQPGTQPGAVIRFSGEGVPRL-RGYGRGDLFIEVEVKIPTRITPRQEEIVTEFMQIEKEKSGEK 358          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_STRMU (Chaperone protein dnaJ OS=Streptococcus mutans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = -2
Query:  417 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLS 716
            V+     +RDG+ I Y+  ++++ A LG T++VPTV G V+L IPAGTQ   T  +  KG P L + N +GDQ V V V  P +L+  +++ +++ A  S
Sbjct:  256 VLKSDKFERDGSTIYYSMDINFVQAALGDTVEVPTVHGNVELAIPAGTQTGKTFRLKGKGAPRL-RGNGQGDQHVTVNVVTPTKLNDAQKEALQDFAKAS 354          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_METTH (Chaperone protein dnaJ OS=Methanobacterium thermoautotrophicum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = -2
Query:  417 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLS 716
            V P  + +R+G N+     +S++ A LG T++VPT+D  V L+IPAGTQ  TT  +   G+P L K N  G+  V+V+V  P++LS  +++L+ E A +S
Sbjct:  258 VKPHSIFRREGANLYTEKPISFVQAALGDTVEVPTLDRPVKLRIPAGTQSGTTFRVKGHGMPHL-KWNGYGNLYVKVKVVTPRKLSPRQKELLREFASIS 356          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_LACJO (Chaperone protein dnaJ OS=Lactobacillus johnsonii GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  411 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKG 716
            V P    +R+GT I     +S+  A LG  I+V TV G VDL IPAGTQPNT   +  +GVP +N +   GDQ V V+V IPK+++ ++++ + +      G
Sbjct:  268 VKPSKEFRRNGTTIYTEAPISFAQAALGDKIRVNTVHGPVDLTIPAGTQPNTNFKLRGQGVPKINGTG-NGDQEVTVKVVIPKKINDKQKEALVDYVKAGGG 368          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_LACGA (Chaperone protein dnaJ OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  411 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKG 716
            V P    +R+GT I     +S+  A LG  I+V TV G VDL IPAGTQPNT   +  +GVP +N +   GDQ V V+V IPK+++ ++++ + +      G
Sbjct:  268 VKPSKEFRRNGTTIYSEAPISFAQAALGDKIRVNTVHGPVDLTIPAGTQPNTNFKLRGQGVPKINGTG-NGDQEVTVKVVIPKKINDKQKEALVDYVKAGGG 368          
BLAST of CX301067 vs. ExPASy Swiss-Prot
Match: DNAJ_SYMTH (Chaperone protein dnaJ OS=Symbiobacterium thermophilum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = -2
Query:  402 VIPDPVLKRDGTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPVLNKSNMRGDQLVRVQVEIPKRLSSEERKLIEELADLSKGKTA 716
            V PD   +R+G ++  T ++S+I A LGT I+V T+DG   +KIP GTQP  T+ +  KG   L  S  RGD  V + V+ P RLS  ER+L+ E+A L   + A
Sbjct:  262 VRPDRRFRREGDDLFTTTEISFIQAALGTEIEVETLDGPELIKIPEGTQPGDTIRLKGKGTHRLRGSG-RGDLHVVISVKTPGRLSERERELLLEVAALRGERVA 365          
The following BLAST results are available for this feature:
BLAST of CX301067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 297
Match NameE-valueIdentityDescription
DNAJ_BACFR1.433e-1338.46Chaperone protein dnaJ OS=Bacteroides fragilis GN=... [more]
DNAJ_BACFN1.433e-1338.46Chaperone protein dnaJ OS=Bacteroides fragilis (st... [more]
DNAJ_ACTSZ1.433e-1338.24Chaperone protein dnaJ OS=Actinobacillus succinoge... [more]
DNAJ_THEAB1.871e-1339.18Chaperone protein dnaJ OS=Thermosipho africanus (s... [more]
DNAJ_SYNFM1.871e-1336.45Chaperone protein dnaJ OS=Syntrophobacter fumaroxi... [more]
DNAJ_STRMU1.871e-1339.00Chaperone protein dnaJ OS=Streptococcus mutans GN=... [more]
DNAJ_METTH1.871e-1340.00Chaperone protein dnaJ OS=Methanobacterium thermoa... [more]
DNAJ_LACJO1.871e-1340.20Chaperone protein dnaJ OS=Lactobacillus johnsonii ... [more]
DNAJ_LACGA1.871e-1340.20Chaperone protein dnaJ OS=Lactobacillus gasseri (s... [more]
DNAJ_SYMTH2.444e-1342.86Chaperone protein dnaJ OS=Symbiobacterium thermoph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08005D05SK PhyRootSw1 Citrus sinensis cDNA clone C08005D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301067 ID=CX301067; Name=CX301067; organism=Citrus sinensis; type=EST; length=717bp
GAATTCGGCACGAGGTTTTTTTTTTTTTTTTGCAAAATTAAAGGATGGTA
TTATTGCACAAAATCTAGTCACACTCCAAAAAATAATTAATAGGTAACTT
ATGAAATCAAGTAGAAAACAAAATTAAAGAGGGATGCATCTCCCATTTCA
CCTCCATTAACCATTCTCAAAGATATCTTCTTGTGGTCAAAAGTATAGCA
ATGTAATTTCACCTACTACTACAGAAACTTGCTTACCCCATTTCCTCAGC
TCAGACACACTGAGAACTGTCAAATTCAGAAATCCCCTTATCATAAGCCA
TATAGACTCAGCAATGACCGCCATAGAATGAAGAATGTTTCTTCGGGGTG
AGCAACATAAATTTGATAAACATAAAAAGGCCCAAGCAACTATCTCCTGC
TTGCTGTCTTTCCCTTGCTCAGATCAGCAAGCTCCTCAATAAGTTTTCTC
TCTTCACTGCTCAATCTTTTCGGGATTTCAACTTGGACGCGTACCAACTG
ATCTCCTCTCATGTTGCTTTTATTTAGTACTGGTACCCCTTTCTTTGCCA
TAACAAGTGTTGTGTTCGGCTGGGTCCCAGCTGGGATCTTCAAATCAACC
ATGCCATCCACTGTTGGGACCTTTATGGTAGTCCCCAAAATTGCATCTAT
ATATGACACTTTGCAGGTATATAAAATGTTGGTACCATCACGTTTTAGCA
CAGGGTCTGGGATAACT
back to top