CX301066

Overview
NameCX301066
Unique NameCX301066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_SCHPO (40S ribosomal protein S21 OS=Schizosaccharomyces pombe GN=rps21 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.054e-16
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            N+ G+LVDLY+PRKC+ATN+II AKD +SVQ+N+  VD E  +  G+K  Y +SGFVRS G ++  +  L  +DG++
Sbjct:    3 NEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVDAEGRQIPGEKTTYAISGFVRSKGESDDCINRLTTQDGLL 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_MOUSE (40S ribosomal protein S21 OS=Mus musculus GN=Rps21 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.054e-16
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY+PRKC+A+N+II AKD +S+Q+N+AEVD  TGR  G+   YG+ G +R +G ++  +  L   DG++
Sbjct:    3 NDAGEFVDLYVPRKCSASNRIIAAKDHASIQMNVAEVDRTTGRFNGQFKTYGICGAIRRMGESDDSILRLAKADGIV 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_CANGA (40S ribosomal protein S21 OS=Candida glabrata GN=RPS21 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            NDKG+LV+LYIPRKC+ATN+II A D +SVQ+NIA+VDEE     G+ I Y LSG VR+ G ++  +  L   DG++
Sbjct:    3 NDKGQLVELYIPRKCSATNRIIKADDHASVQINIAKVDEEGRAIPGEYITYALSGNVRARGESDDSLNRLAQNDGLL 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_BRABE (40S ribosomal protein S21 OS=Branchiostoma belcheri GN=RPS21 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 38/77 (49.35%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE+VDLYIPRKC++TN+II AKD +S+Q+N AEVD  TGR TG+   Y + G++R +G ++  ++ L  +D ++
Sbjct:    3 NDAGEVVDLYIPRKCSSTNRIIGAKDHASIQINFAEVDPTTGRMTGQYKTYAICGYIRQMGESDDCLKRLAIKDKII 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_ASPFU (40S ribosomal protein S21 OS=Aspergillus fumigatus GN=rps21 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDG 315
            N+KGE+VDLY+PRKC+ATN+II A D +SVQ++IA+VD E GR TG+   Y L GF+R+ G ++  +  L  RDG
Sbjct:    3 NEKGEIVDLYVPRKCSATNRIIKANDHASVQISIAKVD-ENGRYTGENQSYALCGFIRARGESDDSLNRLCQRDG 76          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_BIPLU (40S ribosomal protein S21 OS=Biphyllus lunatus GN=RpS21 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.349e-16
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY PRKC+A+N+IIHAKD +S+QL +AEVD +TGR T     Y L G +R +G ++  +  L  +DG++
Sbjct:    3 NDAGEFVDLYCPRKCSASNRIIHAKDHASIQLCVAEVDPQTGRMTDSTKSYALCGAIRRMGESDDCIVRLTKKDGIL 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_PIG (40S ribosomal protein S21 OS=Sus scrofa GN=RPS21 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 37/77 (48.05%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY+PRKC+A+N+II AKD +S+Q+N+AEVD+ TGR  G+   Y + G +R +G ++  +  L   DG++
Sbjct:    3 NDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIV 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_HUMAN (40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 37/77 (48.05%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY+PRKC+A+N+II AKD +S+Q+N+AEVD+ TGR  G+   Y + G +R +G ++  +  L   DG++
Sbjct:    3 NDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIV 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_CERCA (40S ribosomal protein S21 OS=Ceratitis capitata GN=RpS21 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY PRKC+A+N+IIHAKD +SVQLNI +VD ETGR T     Y + G +R +G ++  +  L  +DG++
Sbjct:    3 NDAGESVDLYCPRKCSASNRIIHAKDHASVQLNIVDVDPETGRMTVGSKTYAICGEIRRMGESDDCIVRLAKKDGLI 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_BOVIN (40S ribosomal protein S21 OS=Bos taurus GN=RPS21 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 37/77 (48.05%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY+PRKC+A+N+II AKD +S+Q+N+AEVD+ TGR  G+   Y + G +R +G ++  +  L   DG++
Sbjct:    3 NDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIV 79          
The following BLAST results are available for this feature:
BLAST of CX301066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS21_SCHPO1.054e-1650.6540S ribosomal protein S21 OS=Schizosaccharomyces p... [more]
RS21_MOUSE1.054e-1649.3540S ribosomal protein S21 OS=Mus musculus GN=Rps21... [more]
RS21_CANGA1.377e-1654.5540S ribosomal protein S21 OS=Candida glabrata GN=R... [more]
RS21_BRABE1.377e-1649.3540S ribosomal protein S21 OS=Branchiostoma belcher... [more]
RS21_ASPFU1.798e-1654.6740S ribosomal protein S21 OS=Aspergillus fumigatus... [more]
RS21_BIPLU2.349e-1650.6540S ribosomal protein S21 OS=Biphyllus lunatus GN=... [more]
RS21_PIG5.232e-1648.0540S ribosomal protein S21 OS=Sus scrofa GN=RPS21 P... [more]
RS21_HUMAN5.232e-1648.0540S ribosomal protein S21 OS=Homo sapiens GN=RPS21... [more]
RS21_CERCA5.232e-1651.9540S ribosomal protein S21 OS=Ceratitis capitata GN... [more]
RS21_BOVIN5.232e-1648.0540S ribosomal protein S21 OS=Bos taurus GN=RPS21 P... [more]

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Properties
Property NameValue
Genbank descriptionC08005D03SK PhyRootSw1 Citrus sinensis cDNA clone C08005D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301066 ID=CX301066; Name=CX301066; organism=Citrus sinensis; type=EST; length=487bp
CTCGTGCCGAATTCGGCACGAGGCTTTAAATAAATTATTCATCGATCATA
AATCATGAGCCACCTCAGAAACCAAAGAGAAGGTACTTACAACGATAAGG
GAGAACTCGTCGATCTCTACATCCCCAGAAAGTGCGCTGCTACCAACAAG
ATCATCCACGCTAAGGATAAGTCCTCTGTTCAACTCAACATCGCTGAAGT
CGATGAAGAAACTGGTAGAGCCACCGGCAAGAAGATCATCTACGGTCTTT
CTGGTTTCGTCAGATCCATTGGCAGAGCTAACGCTGAAGTCGAAAACTTG
TTGGCCAGAGATGGTGTTATGCCCTACACTGAATAATTTTGCAGTAAAAA
GAAGACGTGAATGAAGTATATAATGCTGAGTATCGTTTGCATATATTTGT
AACAACTGAATCCCTTCAAACCAGTCCGATACTTTTCTATCAATGTATAG
CTTTGCAAATATAAGACACGAAAAAAAAAAAAAAAAA
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