CX301066

Overview
NameCX301066
Unique NameCX301066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_XENLA (40S ribosomal protein S21 OS=Xenopus laevis GN=rps21 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.925e-16
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY+PRKC+A+N+II AKD +S+Q+NIAEVD+ TGR   +   Y + G +R +G ++  +  L   DG++
Sbjct:    3 NDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDKVTGRFNSQYKTYAICGAIRRMGESDDSIMRLAKNDGIV 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_ICTPU (40S ribosomal protein S21 OS=Ictalurus punctatus GN=rps21 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.166e-15
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY+PRKC+A+N+II AKD +S+Q+NIAEVD+ TGR  G+   Y + G +R +G A+  +  L   D ++
Sbjct:    3 NDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDKVTGRFNGQFKTYAICGAIRRMGEADDSLLRLAKNDSIV 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_PLUXY (40S ribosomal protein S21 OS=Plutella xylostella GN=RpS21 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY PRKC+A+N++IHAKD +SVQL IA+VD  TGRA     +Y + G +R +G ++  +  L  +DG++
Sbjct:    3 NDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADSSKMYVVCGAIRRMGESDDCIVRLTKKDGIL 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_DANRE (40S ribosomal protein S21 OS=Danio rerio GN=rps21 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY+PRKC+A+N+II AKD +S+Q+NIAEVD  TGR  G+   Y + G +R +G A+  +  L   D ++
Sbjct:    3 NDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDRVTGRFNGQFKTYAICGAIRRMGEADDSLLRLAKTDSIV 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_AGRLI (40S ribosomal protein S21 OS=Agriotes lineatus GN=RpS21 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY PRKC+A+N+IIHAKD +S+QL+IAEV   TGR T     Y L G +R +G ++  +  L  +DG++
Sbjct:    3 NDAGEFVDLYCPRKCSASNRIIHAKDHASIQLSIAEVVPATGRMTENTKSYALCGAIRRMGESDDCIVRLTKKDGIL 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_SPOFR (40S ribosomal protein S21 OS=Spodoptera frugiperda GN=RpS21 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY PRKC+A+N++IHAKD +SVQL IA+VD  TGRA     +Y + G +R +G ++  +  L  +DG++
Sbjct:    3 NDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGIL 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_CYAPA (40S ribosomal protein S21 OS=Cyanophora paradoxa GN=RPS21 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 36/76 (47.37%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGV 318
            ND+G++VDLYIPRKC+ATN++I A D ++VQ+N+  VD  +G  TG    + L GFVRS+G ++A +  L  + G+
Sbjct:    3 NDEGKIVDLYIPRKCSATNRLISATDHAAVQINVGHVDPNSGLYTGDYTTFALCGFVRSMGESDAALNRLCVKHGL 78          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_BOMMO (40S ribosomal protein S21 OS=Bombyx mori GN=RpS21 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY PRKC+A+N++IHAKD +SVQL IA+VD  TGRA     +Y + G +R +G ++  +  L  +DG++
Sbjct:    3 NDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDGIL 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_XENTR (40S ribosomal protein S21 OS=Xenopus tropicalis GN=rps21 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENLLARDGVM 321
            ND GE VDLY+PRKC+A+N+II AKD +S+Q+NIAEVD+ TGR   +   Y + G +R +G ++  +  L   D ++
Sbjct:    3 NDAGEFVDLYVPRKCSASNRIIGAKDHASIQINIAEVDKVTGRFNSQYKTYAICGAIRRMGESDDSILRLAKNDCIV 79          
BLAST of CX301066 vs. ExPASy Swiss-Prot
Match: RS21_ORYSJ (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica GN=RPS21 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 36/70 (51.43%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   91 NDKGELVDLYIPRKCAATNKIIHAKDKSSVQLNIAEVDEETGRATGKKIIYGLSGFVRSIGRANAEVENL 300
            N++G++VDLY+PRKC+ATN+II AKD +SVQ+NI  VD E G   G+   + LSGF+R+ G A++ ++ L
Sbjct:    3 NEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIRAQGDADSALDRL 71          
The following BLAST results are available for this feature:
BLAST of CX301066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS21_XENLA8.925e-1648.0540S ribosomal protein S21 OS=Xenopus laevis GN=rps... [more]
RS21_ICTPU1.166e-1549.3540S ribosomal protein S21 OS=Ictalurus punctatus G... [more]
RS21_PLUXY1.988e-1549.3540S ribosomal protein S21 OS=Plutella xylostella G... [more]
RS21_DANRE1.988e-1549.3540S ribosomal protein S21 OS=Danio rerio GN=rps21 ... [more]
RS21_AGRLI1.988e-1550.6540S ribosomal protein S21 OS=Agriotes lineatus GN=... [more]
RS21_SPOFR2.597e-1549.3540S ribosomal protein S21 OS=Spodoptera frugiperda... [more]
RS21_CYAPA2.597e-1547.3740S ribosomal protein S21 OS=Cyanophora paradoxa G... [more]
RS21_BOMMO2.597e-1549.3540S ribosomal protein S21 OS=Bombyx mori GN=RpS21 ... [more]
RS21_XENTR1.289e-1446.7540S ribosomal protein S21 OS=Xenopus tropicalis GN... [more]
RS21_ORYSJ1.091e-1351.4340S ribosomal protein S21 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC08005D03SK PhyRootSw1 Citrus sinensis cDNA clone C08005D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301066 ID=CX301066; Name=CX301066; organism=Citrus sinensis; type=EST; length=487bp
CTCGTGCCGAATTCGGCACGAGGCTTTAAATAAATTATTCATCGATCATA
AATCATGAGCCACCTCAGAAACCAAAGAGAAGGTACTTACAACGATAAGG
GAGAACTCGTCGATCTCTACATCCCCAGAAAGTGCGCTGCTACCAACAAG
ATCATCCACGCTAAGGATAAGTCCTCTGTTCAACTCAACATCGCTGAAGT
CGATGAAGAAACTGGTAGAGCCACCGGCAAGAAGATCATCTACGGTCTTT
CTGGTTTCGTCAGATCCATTGGCAGAGCTAACGCTGAAGTCGAAAACTTG
TTGGCCAGAGATGGTGTTATGCCCTACACTGAATAATTTTGCAGTAAAAA
GAAGACGTGAATGAAGTATATAATGCTGAGTATCGTTTGCATATATTTGT
AACAACTGAATCCCTTCAAACCAGTCCGATACTTTTCTATCAATGTATAG
CTTTGCAAATATAAGACACGAAAAAAAAAAAAAAAAA
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