EY702468

Overview
NameEY702468
Unique NameEY702468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3190 contig Csv1_Contig3190:1..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.253e-23
Identity = 58/119 (48.74%), Postives = 81/119 (68.07%), Query Frame = 1
Query:  277 KEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 612
            K+E D RSV+VGNVDY  T ++++  F SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:   87 KKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.363e-22
Identity = 62/136 (45.59%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  208 QAKVEKEMGAAQ----DPANV----AANQANKEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRG 588
            Q + E+E G A      P  V    +     K EAD RSV+VGNVDY  + EE++  F  CG V+RVTIL DKF G PKG+AY+EF    +VQ A++L++S   GR +KVLPKRTN PG+          + G RG
Sbjct:  110 QQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRG 245          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.000e-21
Identity = 57/109 (52.29%), Postives = 76/109 (69.72%), Query Frame = 1
Query:  274 NKEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVP-GMKQ-YRPRRFNPYMGYRGR 591
            ++EE DSRSV+VGNVDY  T +++   FQSCGTVNR+TIL+DK  G PKG  YVEF+  +++  A+ LN+S  + RQLK+ PKRTN+P  M+Q   P     + G RGR
Sbjct:   94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGR 202          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.456e-21
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 1
Query:  283 EADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 540
            EAD RSV+VGNVDY  +  E++  F  CG ++RVTIL DKF G PKG+AY+EF    +VQ A++L+ES   GR +KVLPKRTN PG+
Sbjct:  135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.211e-20
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 1
Query:  283 EADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 540
            EAD RSVFVGNVDY  +  E++  F  CG ++RVTIL DKF G PKG+AY+EF    +V+ A+ L+ES   GR +KVLPKRTN PG+
Sbjct:  139 EADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: SGN1_YEAST (RNA-binding protein SGN1 OS=Saccharomyces cerevisiae GN=SGN1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 59/147 (40.14%), Postives = 86/147 (58.50%), Query Frame = 1
Query:  271 ANKEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ--------YRPRRFN-PYMGYRG--RRPYVPPY--FYSP---YGYGKVPRFRRP 660
            A++ EADSRS+FVGN+    TPE+++  F+ CG + R+T+L D+  G PKG+ Y+EF      ++ALQLN  EL G+++ V  KRTN+PG  +        ++  ++N P M Y      PY PPY    SP   +GY K   +R P
Sbjct:   56 AHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQWNYPLMAYPNPDTFPYYPPYPPNQSPNQNFGYNKNNYYRSP 202          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: YQOC_CAEEL (Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.256e-15
Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = 1
Query:  208 QAKVEKEMGAAQDPANVAANQANKEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 540
            Q K+ K + +A   A V   +  ++  D++SVF+GNVD+  T EEV+  F+ CG + R TI  DKF  + K FAY+EF +  +++ AL +N S    R + V  KRTN+PGM
Sbjct:   35 QNKMAKNLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 143          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: YQO4_CAEEL (Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.798e-15
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 1
Query:  208 QAKVEKEMGAAQDPANVAANQANKEEADSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 540
            Q K+ K + +A   A V   +  ++  D++SVF+GNVD+  T EE++  F+ CG + + TI  DKF  + K FAY+EF +  +++ AL +N S    R + V  KRTN+PGM
Sbjct:   29 QNKMAKHLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 137          
BLAST of EY702468 vs. ExPASy Swiss-Prot
Match: RBM34_HUMAN (RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  289 DSRSVFVGNVDYACTPEEVQRDFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 513
            D RSVFVGN+ Y      +++ F  CG++  V I+ DK  G  KGF YV F   D+V  AL+LN SEL GR+L+V+
Sbjct:  285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM 360          
The following BLAST results are available for this feature:
BLAST of EY702468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
EPA2A_XENLA1.253e-2348.74Embryonic polyadenylate-binding protein 2-A OS=Xen... [more]
EPAB2_HUMAN2.363e-2245.59Embryonic polyadenylate-binding protein 2 OS=Homo ... [more]
PABP2_DICDI2.000e-2152.29Polyadenylate-binding protein 2 OS=Dictyostelium d... [more]
EPAB2_RAT4.456e-2157.47Embryonic polyadenylate-binding protein 2 OS=Rattu... [more]
EPAB2_MOUSE2.211e-2057.47Embryonic polyadenylate-binding protein 2 OS=Mus m... [more]
SGN1_YEAST1.433e-1940.14RNA-binding protein SGN1 OS=Saccharomyces cerevisi... [more]
YQOC_CAEEL1.256e-1541.07Putative RNA-binding protein EEED8.12 OS=Caenorhab... [more]
YQO4_CAEEL2.798e-1539.29Putative RNA-binding protein EEED8.4 OS=Caenorhabd... [more]
RBM34_HUMAN7.131e-1147.37RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-C10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702468 ID=EY702468; Name=EY702468; organism=Citrus sinensis; type=EST; length=874bp
CGACCCACGCGTCCGAGAAGAGAGAGAATGGAGGAAGAAGAGCACGAGGT
TTACGGAGGCGAAATCCCTGACGTGGAAGGTGACATGGACGCTCACAATA
CTGACGTCGACATGTCGGCGGCCGATGACGACGGCGGCGGGGGGCTGGAT
GAGATGAAGAAGCGGTTGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCG
TGAGATGCAAGCTAAGGTCGAGAAAGAGATGGGCGCTGCTCAAGATCCTG
CTAATGTGGCTGCTAATCAAGCAAACAAAGAAGAGGCAGATTCACGATCA
GTCTTTGTTGGCAATGTAGATTATGCATGCACTCCTGAAGAAGTGCAGCG
AGATTTCCAATCCTGTGGTACTGTAAACAGGGTAACTATTCTGACAGACA
AGTTTGGCCAGCCAAAGGGTTTTGCTTATGTGGAATTCCTTGAAATAGAT
GCTGTTCAAGAGGCTCTCCAGTTGAATGAGTCTGAATTACATGGCCGTCA
ACTGAAGGTTTTGCCTAAGAGGACAAATGTCCCTGGTATGAAGCAGTATC
GTCCAAGGCGTTTCAATCCTTACATGGGGTACCGAGGCAGGAGGCCCTAT
GTACCTCCTTATTTCTATTCACCTTATGGATATGGGAAGGTTCCGAGGTT
CAGAAGGCCAATGAGGTACATGGCCTACTACTAGCAGATTGTGCTCCTGT
TGAAGATGGTGACATTTGTGGATCATCCATAAACTAAAAAATCAATGTAT
CATGGTGCTTTTGGATCCTGCTTTAGATAGGAAACCAAGGATCTATTAGC
TACATGGTTATTATGGATGTCTTGGATGATCCACATCATTAGCATGAACT
TATGGGATTTCTTGGTGACTTGGA
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