CX301033

Overview
NameCX301033
Unique NameCX301033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_AEDAE (60S ribosomal protein L23 OS=Aedes aegypti GN=RpL23-A PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.401e-57
Identity = 102/136 (75.00%), Postives = 126/136 (92.65%), Query Frame = 3
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSI 482
            +GRGG+ G KFR +LGLPVGAV+NCADNTGAK+L +I+V+GI+GRLN+LP+A VGD+ +A+ KKGKPELRKKV PAV++RQRK +RR++G+++YFEDNAGVIVNNKGEMKGSA+ GPVAKECADLWPRIASN+GSI
Sbjct:    4 RGRGGSAGGKFRISLGLPVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_DROME (60S ribosomal protein L23 OS=Drosophila melanogaster GN=RpL23 PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 9.079e-57
Identity = 102/136 (75.00%), Postives = 124/136 (91.18%), Query Frame = 3
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSI 482
            +GRGG  G KFR +LGLPVGAV+NCADNTGAK+L +I+V+GI+GRLN+LP+A VGD+ +A+ KKGKPELRKKV PAV++RQRK +RR++G++IYFEDNAGVIVNNKGEMKGSA+ GPVAKECADLWPRIASN+ SI
Sbjct:    4 RGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSI 139          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.885e-56
Identity = 102/137 (74.45%), Postives = 121/137 (88.32%), Query Frame = 3
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            +GRGG+ G KFR +LGLPV A +NCADNTGAK+L IISV GIKGRLN+LPSA VGD+VMA+ KKGKP+LRKKV PAV+VRQRK WRRK+G+++YFEDNAGVIVN KGEMKGSA+ GP+ KECADLWPRIAS + +I+
Sbjct:    4 RGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPRIASAANAIV 140          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_SCHPO (60S ribosomal protein L23 OS=Schizosaccharomyces pombe GN=rpl23a PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.885e-56
Identity = 98/139 (70.50%), Postives = 123/139 (88.49%), Query Frame = 3
Query:   69 MGKGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            M +GRG A G K+R TLGLPV A++NCADN+GAK+L I+SV+G   RLN+LP+AS GD+V+A+ KKGKP+LRKK+ PA++VRQRK WRRK+G+Y+YFEDNAGVIVN KGEMKGSA+ GPVAKECADLWPRIASN+G+++
Sbjct:    1 MSRGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNAGTVV 139          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_BRUMA (60S ribosomal protein L23 OS=Brugia malayi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.885e-56
Identity = 106/136 (77.94%), Postives = 120/136 (88.24%), Query Frame = 3
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSI 482
            +GRGGA G KFR +LGLPVGAV+NCADNTGAK+L +I+V GIKGRLN+LPSA VGD+ +AS KKGKPELRKKV  AV+VRQRK +RR +G  IYFEDNAGVIVNNKGEMKGSA+ GPV KECADLWPRIASN+GSI
Sbjct:    4 RGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASVKKGKPELRKKVLQAVVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPRIASNAGSI 139          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 216.468 bits (550), Expect = 1.004e-55
Identity = 104/137 (75.91%), Postives = 120/137 (87.59%), Query Frame = 3
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            +GRGG  G KFR +LGLPV A VNCADNTGAK+L IISV GIKGRLN+LPSA VGD+VMA+ KKGKP+LRKKV PAVIVRQRK WRRK+G+++YFEDNAGVIVN KGEMKGSA+ GP+ KECADLWPRIAS + +I+
Sbjct:    4 RGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.663e-53
Identity = 99/137 (72.26%), Postives = 121/137 (88.32%), Query Frame = 3
Query:   75 KGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            +GRGG+ G KFR +LGLPVGAVVNCADNTGAK+L +IS  G++GRLN+LP+A+VGD+VMA+ KKGKP+LRKKV PAVIVRQRK WRRK+G+++YFEDNAGVIVN KGEM  SA+ GP+ KECADLWPRIAS + +I+
Sbjct:    4 RGRGGSSGNKFRMSLGLPVGAVVNCADNTGAKNLYVISS-GVRGRLNRLPAAAVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGPIGKECADLWPRIASAANAIV 139          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_YEAST (60S ribosomal protein L23 OS=Saccharomyces cerevisiae GN=RPL23A PE=1 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 5.156e-52
Identity = 93/133 (69.92%), Postives = 117/133 (87.97%), Query Frame = 3
Query:   87 GAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            GA G KFR +LGLPVGA++NCADN+GA++L II+V G   RLN+LP+AS+GD+VMA+ KKGKPELRKKV PA++VRQ K+WRR++G+++YFEDNAGVI N KGEMKGSA+ GPV KECADLWPR+ASNSG ++
Sbjct:    5 GAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV 137          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_DICDI (60S ribosomal protein L23 OS=Dictyostelium discoideum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.648e-48
Identity = 90/132 (68.18%), Postives = 116/132 (87.88%), Query Frame = 3
Query:   90 AVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKGEMKGSAVAGPVAKECADLWPRIASNSGSIL 485
            AVG  +R +LGLPVGAV+N ADN+GAK+L +I+V GIKGRLN+LPSA VGD+VMA+ KKGKPELRKKV   ++VRQRK W+RK+G+YIYFEDNAGV+ N KGE+KG+ + GPVAKEC+DLWP++A+N+G+I+
Sbjct:    6 AVGSNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGEVKGN-ILGPVAKECSDLWPKVATNAGTIV 136          
BLAST of CX301033 vs. ExPASy Swiss-Prot
Match: RL23_TRYCR (60S ribosomal protein L23 OS=Trypanosoma cruzi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.171e-42
Identity = 89/141 (63.12%), Postives = 113/141 (80.14%), Query Frame = 3
Query:   69 MGKGRGGAVGLKFRTTLGLPVGAVVNCADNTGAKSLMIISVYGIKGRLNKLPSASVGDLVMASCKKGKPELRKKVHPAVIVRQRKTWRRKEGLYIYFEDNAGVIVNNKG-EMKGSAVAGPVAKECA-DLWPRIASNSGSIL 485
            MGK +    G +FR +L LPVGAVVNCADNTGAK+L IISV G  GRLN+LP+A++GD+VMAS KKGKPELR+KV  AVI+RQRK+WRRK+G  IYFEDNAGVIVN++G + + S +AGPVAKE      P+I+S++ +I+
Sbjct:    1 MGKEKANVKGCRFRVSLALPVGAVVNCADNTGAKNLYIISVKGYHGRLNRLPAAALGDIVMASVKKGKPELRRKVLNAVIIRQRKSWRRKDGTVIYFEDNAGVIVNSQGRDGRVSGIAGPVAKEAGRPSGPKISSHAPAIV 141          
The following BLAST results are available for this feature:
BLAST of CX301033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL23_AEDAE1.401e-5775.0060S ribosomal protein L23 OS=Aedes aegypti GN=RpL2... [more]
RL23_DROME9.079e-5775.0060S ribosomal protein L23 OS=Drosophila melanogast... [more]
RL23_TOBAC5.885e-5674.4560S ribosomal protein L23 OS=Nicotiana tabacum GN=... [more]
RL23_SCHPO5.885e-5670.5060S ribosomal protein L23 OS=Schizosaccharomyces p... [more]
RL23_BRUMA5.885e-5677.9460S ribosomal protein L23 OS=Brugia malayi GN=RPL2... [more]
RL23_ARATH1.004e-5575.9160S ribosomal protein L23 OS=Arabidopsis thaliana ... [more]
RL23_TORRU4.663e-5372.2660S ribosomal protein L23 OS=Tortula ruralis GN=RP... [more]
RL23_YEAST5.156e-5269.9260S ribosomal protein L23 OS=Saccharomyces cerevis... [more]
RL23_DICDI2.648e-4868.1860S ribosomal protein L23 OS=Dictyostelium discoid... [more]
RL23_TRYCR2.171e-4263.1260S ribosomal protein L23 OS=Trypanosoma cruzi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC08005A04SK PhyRootSw1 Citrus sinensis cDNA clone C08005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301033 ID=CX301033; Name=CX301033; organism=Citrus sinensis; type=EST; length=663bp
GAATTCGGCACGAGGAATTAGTTGTGTTTTCACGAGTATATCTCCATATT
TAATCCACTAGAAAAGAAATGGGAAAAGGAAGAGGAGGTGCTGTCGGACT
TAAGTTCCGAACTACTTTAGGTCTTCCAGTTGGAGCCGTTGTTAACTGTG
CTGACAACACTGGTGCCAAGTCTTTAATGATTATCTCTGTATATGGAATC
AAGGGTAGATTGAACAAGTTACCATCTGCTTCCGTTGGTGATTTAGTCAT
GGCCTCCTGTAAGAAGGGTAAACCAGAGTTAAGAAAGAAGGTTCACCCAG
CCGTCATCGTTCGTCAACGTAAGACCTGGAGAAGAAAGGAAGGTCTTTAC
ATCTATTTCGAAGATAATGCTGGTGTTATTGTCAATAATAAGGGTGAAAT
GAAGGGATCTGCCGTCGCAGGACCTGTCGCCAAGGAGTGTGCTGATTTAT
GGCCTCGTATTGCTTCCAACTCTGGTTCCATCCTTTAAATGCAATCACGT
GGAATAAAAAATATTCATAAACACTACTTCCTTATTCTCTATACATAATG
AAGTTCTCATCGATGAAACAATGCATCCAGAGCATAGAAGTGAATAAACA
TCTGAGAATCCAACTGAAACACACTAATTAAATAAAAACTGGTTAAAAAA
AAAAAAAAAAAAA
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