CX301031

Overview
NameCX301031
Unique NameCX301031
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: EF2_THEAC (Elongation factor 2 OS=Thermoplasma acidophilum GN=fusA PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 57/158 (36.08%), Postives = 88/158 (55.70%), Query Frame = 2
Query:   23 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 496
            G LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   AK  LLEPV  V I  P++ +G   + + Q+RG + E+M++ G  + ++ A +PV   FGF+  +R AT G+     V   ++      + P  Q + +V  IR+RKGL+++
Sbjct:  573 GPLANEKVFGVKARLVDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAKRVLLEPVQRVFINVPQEEMGAAINEIQQRRG-IIEDMKQEGDEI-SLTAKVPVAGMFGFASAIRGATGGK-----VLWSFENAGYQKVPPELQDS-IVRSIRERKGLRQE 722          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: EF2_HALMA (Elongation factor 2 OS=Haloarcula marismortui GN=fusA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 56/166 (33.73%), Postives = 91/166 (54.82%), Query Frame = 2
Query:   20 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 517
            +G LA E ++G    + D  LH DAIHRG  QVIP  R  ++ S + A  +LLEP+  V I  P   +G     +  +RG V ++M + G  L  ++   PV E  GFS  +R+AT G+A        + ++ +D L+P       +++IR+RKG+K+++ P  ++
Sbjct:  570 DGPLASEPVQGSLIRLHDARLHEDAIHRGPAQVIPAVREAVHNSLIDASIKLLEPIQQVRIDVPNDHMGAASGEIQGRRGRV-DDMYQEG-DLMVVEGVAPVDEMIGFSSDIRSATEGRASWNTENAGFQVL-ADNLQP-----DKISEIRERKGMKQELNPAIDY 727          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: EF2_PICTO (Elongation factor 2 OS=Picrophilus torridus GN=fusA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.686e-18
Identity = 59/160 (36.88%), Postives = 86/160 (53.75%), Query Frame = 2
Query:   20 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGLKEQ 496
            +G LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   A   LLEP+  V I  P++ +G + + L Q+RG V E+MQ+ G  +  I A +PV    GF+  +R+AT G+         W+  ++     P      +VA IR+RKGLK +
Sbjct:  572 KGPLANEKVYGLKVSLMDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAGRVLLEPMQKVFISVPQEIMGSVTNELQQRRG-VVEDMQQNGEEI-TIIAKVPVAGMIGFASAIRSATGGKVI-------WNSENAGYQRVPYEMQKDVVAKIRERKGLKPE 722          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: EF2_THEVO (Elongation factor 2 OS=Thermoplasma volcanium GN=fusA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.814e-18
Identity = 58/158 (36.71%), Postives = 87/158 (55.06%), Query Frame = 2
Query:   23 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 496
            G LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   AK  LLEPV  V I  P++ +G   + + Q+RG V E+M + G  + ++ A +PV   FGF+  +R+AT G+     V   ++      + P  Q + +V  IR+RKGL+ +
Sbjct:  573 GPLANEKVFGVKARLVDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAKRILLEPVQKVFINVPQEEMGSAINEVQQRRG-VIEDMTQEGEEV-SLVARIPVSGMFGFASAIRSATGGK-----VLWSFENAGYQKVPPELQDS-VVRSIRERKGLRPE 722          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: EF2_METST (Elongation factor 2 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=fusA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.814e-18
Identity = 53/157 (33.76%), Postives = 84/157 (53.50%), Query Frame = 2
Query:   20 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 487
            +G LA E   GI   + D  +H DA+HRG  QV+P  R+ +Y + + A+P L+EP+  V I  P+  +G     +  +RG + E  Q     +  I++ +PV E FGF+G +R+A  G    +C+   W   +S     P     ++V +IR+RKGL
Sbjct:  571 DGPLANEKAMGIKISLMDAKIHEDAVHRGPAQVLPAIRKAVYGAIMLAQPTLMEPMQKVYISVPQDYMGAATREVQNRRGQIVEMGQE--GDMSTIESKVPVSEMFGFAGDIRSAAEG----RCI---WSTENSGFERIPRELQNKIVKEIRERKGL 718          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.878e-17
Identity = 55/155 (35.48%), Postives = 83/155 (53.55%), Query Frame = 2
Query:   23 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGL 487
            G +A E   G+  ++ D  LH DAIHRG GQVIP  R  I  +   A   L EPV ++ +  P   +G + +++N +RG + +        L  IKA +PV E  GF+ TLR+ATSG+     V   ++ +  +  +      Q+V +IR+RKGL
Sbjct:  590 GPIAWEPCIGLIVKLTDAQLHEDAIHRGPGQVIPAVREAIKLAMKDAGLVLYEPVQVILVDVPPDYIGDVTALINSRRGAILDIQTEEDRAL--IKAKVPVREMIGFTDTLRSATSGRGVWYLVDQVYEPVPRELFD------QIVREIRQRKGL 736          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: EF2_PYRWO (Elongation factor 2 OS=Pyrococcus woesei GN=fusA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.065e-17
Identity = 54/157 (34.39%), Postives = 83/157 (52.87%), Query Frame = 2
Query:   20 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 487
            EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   ++Q+RG +  +M++ G  +  I A  PV E FGF+G +R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  571 EGPLAKEPVMKVIVRLVDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGAVSREISQRRGQLI-DMRQEG-EVMTIIAEAPVAEMFGFAGAIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: EF2_PYRKO (Elongation factor 2 OS=Pyrococcus kodakaraensis GN=fusA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.065e-17
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 2
Query:   20 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGL 487
            EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   LNQ+RG +  +M++ G  +  I    PV E FGF+G +R ATSG+A      +H    +     P   A Q++  IR+RKGL
Sbjct:  571 EGPLAKEPVMKVIVRLHDAKIHEDNVHRGPAQIYPAIRSAIHCAMMKAGPVLYEPYQKVIINVPYEYMGAVSRELNQRRGQLI-DMRQEGEVMI-IIGEAPVAEMFGFAGAIRGATSGKAL--WTTEH----AGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: EF2_PYRFU (Elongation factor 2 OS=Pyrococcus furiosus GN=fusA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.065e-17
Identity = 54/157 (34.39%), Postives = 83/157 (52.87%), Query Frame = 2
Query:   20 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 487
            EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   ++Q+RG +  +M++ G  +  I A  PV E FGF+G +R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  571 EGPLAKEPVMKVIVRLVDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGAVSREISQRRGQLI-DMRQEG-EVMTIIAEAPVAEMFGFAGAIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CX301031 vs. ExPASy Swiss-Prot
Match: EF2_NATPD (Elongation factor 2 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=fusA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.065e-17
Identity = 56/160 (35.00%), Postives = 88/160 (55.00%), Query Frame = 2
Query:   20 EGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQM 499
            +G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A+ +LLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFS  +R+AT G+A        + +M +D L+P T     + +IR+RKG+K ++
Sbjct:  571 DGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPAVREAVHNALIDAEIKLLEPIQEVRIDVPNEHMGAASGEIQGRRGRV-DDMYQEG-DLMVVEGVAPVDEMIGFSSDIRSATEGRASWNTENAGFRVM-ADNLQPET-----IDEIRERKGMKLEL 722          
The following BLAST results are available for this feature:
BLAST of CX301031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF2_THEAC1.206e-1836.08Elongation factor 2 OS=Thermoplasma acidophilum GN... [more]
EF2_HALMA1.206e-1833.73Elongation factor 2 OS=Haloarcula marismortui GN=f... [more]
EF2_PICTO2.686e-1836.88Elongation factor 2 OS=Picrophilus torridus GN=fus... [more]
EF2_THEVO7.814e-1836.71Elongation factor 2 OS=Thermoplasma volcanium GN=f... [more]
EF2_METST7.814e-1833.76Elongation factor 2 OS=Methanosphaera stadtmanae (... [more]
EF2_NANEQ3.878e-1735.48Elongation factor 2 OS=Nanoarchaeum equitans GN=fu... [more]
EF2_PYRWO5.065e-1734.39Elongation factor 2 OS=Pyrococcus woesei GN=fusA P... [more]
EF2_PYRKO5.065e-1735.26Elongation factor 2 OS=Pyrococcus kodakaraensis GN... [more]
EF2_PYRFU5.065e-1734.39Elongation factor 2 OS=Pyrococcus furiosus GN=fusA... [more]
EF2_NATPD5.065e-1735.00Elongation factor 2 OS=Natronomonas pharaonis (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08005A02SK PhyRootSw1 Citrus sinensis cDNA clone C08005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301031 ID=CX301031; Name=CX301031; organism=Citrus sinensis; type=EST; length=741bp
GGAATTCGGCACGAGGAAAGAAGGTGCGCTGGCTGAAGAGAACATGAGAG
GTATCTGCTTTGAAGTATGTGATGTTGTTCTTCACGCTGATGCCATTCAC
AGAGGTGGTGGTCAAGTCATTCCTACTGCTAGGAGGGTCATATATGCTTC
CCAGCTCACAGCCAAGCCCAGGCTTCTTGAGCCTGTCTACATGGTCGAAA
TACAGGCTCCCGAGCAGGCCCTTGGTGGTATTTACAGTGTTCTCAATCAG
AAACGTGGTCACGTGTTCGAGGAAATGCAGAGACCTGGTACCCCCCTTTA
CAACATCAAGGCTTACCTTCCCGTCATCGAGTCCTTTGGATTCTCAGGCA
CTTTGAGGGCTGCAACGTCAGGACAGGCCTTCCCACAATGTGTGTTTGAT
CACTGGGACATGATGTCATCCGATCCACTGGAGCCTGGTACACAGGCTGC
ACAGCTTGTTGCTGATATCAGGAAGAGGAAGGGCTTGAAGGAGCAAATGA
CACCACTATCTGAGTTTGAGGACAAGCTGTAAACATTTCGTCTTGACATC
AAGGGTGAGATTGCGCAGCTTGTTGCTGATATCAGGAAGAGGGAGCAAAT
GACACCGCTATCCGAGTAGAGGACGAGCTGTAAACATTTCATCTTGACAT
CAAGGGTGAGATTGCGCAGCAATATTTTTTGCTGATGCTTATTTTTGTTT
CAAGTTTTTCATATCCTCATTGTGTTTAGTAAAGTATATTA
back to top