CX300835

Overview
NameCX300835
Unique NameCX300835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300835 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.381e-18
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 3
Query:  210 MQIFVKTLTGKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 437
            M+I VKTLT K I +E+E +D+I+ +K++I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          

HSP 2 Score: 78.5666 bits (192), Expect = 1.471e-14
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = 3
Query:   12 KTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 209
            K I +E+E +D+I+ +K++I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:   11 KQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          
BLAST of CX300835 vs. ExPASy Swiss-Prot
Match: UBD_HUMAN (Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.681e-16
Identity = 50/146 (34.25%), Postives = 78/146 (53.42%), Query Frame = 3
Query:   18 ITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 437
            +T +  P DS+  +K+ ++ K  +P   Q L+   K L+  R+LS Y I KE T+HL L++       + +F+       K   L+V  S S+  VK  I+ K GI P+ Q +   GK+LEDG+ ++DY I+K + L L     GG
Sbjct:   20 MTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165          
BLAST of CX300835 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.681e-16
Identity = 40/76 (52.63%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  210 MQIFVKTLTGKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 437
            M + VKTLTGK I++E++ SD + ++K+ +++KEGIPP QQRLIF GKQ++D  T++D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          

HSP 2 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 34/67 (50.75%), Postives = 52/67 (77.61%), Query Frame = 3
Query:    9 GKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 209
            GK I++E++ SD + ++K+ +++KEGIPP QQRLIF GKQ++D  T++D ++ +   LHLVL LRGG
Sbjct:   10 GKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of CX300835 vs. ExPASy Swiss-Prot
Match: UCRP_MOUSE (Ubiquitin cross-reactive protein OS=Mus musculus GN=Isg15 PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 2.509e-14
Identity = 47/144 (32.64%), Postives = 77/144 (53.47%), Query Frame = 3
Query:    9 GKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR-LRGGMQIFVKTLTGKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 437
            G    + V  S ++  +K++I  K G+P  QQRL      L+DG TLS   +   ST+ LV++     + I V+   G +   EV  + ++D +K+K+  +E +  DQ  L F G+ +ED   L +Y ++ + T+   LRLRGG
Sbjct:   12 GNDFLVSVTNSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNCSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHLRLRGG 155          
BLAST of CX300835 vs. ExPASy Swiss-Prot
Match: UBD_RAT (Ubiquitin D OS=Rattus norvegicus GN=Ubd PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.301e-14
Identity = 45/146 (30.82%), Postives = 74/146 (50.68%), Query Frame = 3
Query:   18 ITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL------RGGMQIFVKTLTGKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 437
            +T +   SD +  + + I+ +  +    Q L+   K L+  R LS Y I KE+T+HL L++         + +      G+   L V  S S+  VK+ I++   +PP +Q +   GK+LEDG+ ++DYNI+  S L L     GG
Sbjct:   16 MTFDTTMSDKVKKINEHIRSQTKVSVQDQILLLDSKILKPHRALSSYGIDKENTIHLTLKVVKPSDEELPLSLVESGDEGQRHLLRVRRSSSVAQVKEMIENVTAVPPKKQIVNCNGKRLEDGKIMADYNIKSGSLLFLTAHCIGG 161          
BLAST of CX300835 vs. ExPASy Swiss-Prot
Match: UBD_MOUSE (Ubiquitin D OS=Mus musculus GN=Ubd PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.180e-13
Identity = 45/148 (30.41%), Postives = 75/148 (50.68%), Query Frame = 3
Query:   12 KTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL----RGGMQIFV--KTLTGKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 437
            + +T E   +D +  + + I+ +  +    Q L+   K L+  R LS Y I KE+T+HL L++       + +F+      G+   L V  S S+  VK+ I+    + P +Q +   GK+LEDG+ ++DYNI+  S L L     GG
Sbjct:   15 RLMTFETTENDKVKKINEHIRSQTKVSVQDQILLLDSKILKPHRKLSSYGIDKETTIHLTLKVVKPSDEELPLFLVESKNEGQRHLLRVRRSSSVAQVKEMIESVTSVIPKKQVVNCNGKKLEDGKIMADYNIKSGSLLFLTTHCTGG 162          
BLAST of CX300835 vs. ExPASy Swiss-Prot
Match: UCRP_HUMAN (Interferon-induced 17 kDa protein OS=Homo sapiens GN=ISG15 PE=1 SV=5)

HSP 1 Score: 70.0922 bits (170), Expect = 5.232e-12
Identity = 47/146 (32.19%), Postives = 77/146 (52.74%), Query Frame = 3
Query:    9 GKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 437
            G    + +  S S+  +K +I  K G+   QQRL    +G  L+D   L+   +   ST+ LV+ +    + I V+   G++ T EV  + ++ ++KQ++   EG+  D   L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct:   12 GNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157          
BLAST of CX300835 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.166e-11
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 3
Query:  210 MQIFVKTLTGKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 437
            M++F++TLTG    L V P +++ +VK KI+  EGIP  +Q LI+   +LE+   L+DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103          
BLAST of CX300835 vs. ExPASy Swiss-Prot
Match: UCRP_BOVIN (Ubiquitin cross-reactive protein OS=Bos taurus GN=ISG15 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 3.391e-11
Identity = 44/145 (30.34%), Postives = 77/145 (53.10%), Query Frame = 3
Query:    9 GKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 437
            G+ I + +  S ++  +KQ I  K  +P  QQRL     +  L++G  L    ++  ST+ LV++    + I V+   G++   EV+   ++  +KQ++  KE +  DQ  L F G+ ++D   L +Y + K  T+ + LRLRGG
Sbjct:   12 GQEILVPLRDSMTVSELKQFIAQKINVPAFQQRLAHLDSREVLQEGVPLVLQGLRAGSTVLLVVQ--NCISILVRNDKGRSSPYEVQLKQTVAELKQQVCQKERVQADQFWLSFEGRPMDDEHPLEEYGLMKGCTVFMNLRLRGG 154          
BLAST of CX300835 vs. ExPASy Swiss-Prot
Match: OASL_HUMAN (59 kDa 2'-5'-oligoadenylate synthetase-like protein OS=Homo sapiens GN=OASL PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.391e-11
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 3
Query:   24 LEVEPSDSIDNVKQKIQDKEGIPPDQQRLIF----AGKQLEDGR-TLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 416
            L V P + I  VK+KI+   G     QRL F    + +QL   R +L+ Y I   + ++L+  +   +Q+FVK   G +    + P+  I  +KQ+I+D++G+P  QQ+L F G+ L+D   L  Y IQ   TL L
Sbjct:  368 LIVNPYEPIRKVKEKIRRTRGYS-GLQRLSFQVPGSERQLLSSRCSLAKYGIFSHTHIYLLETIPSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLIL 502          
The following BLAST results are available for this feature:
BLAST of CX300835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RUB3_ARATH6.381e-1853.95NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
UBD_HUMAN2.681e-1634.25Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2[more]
RUB1_YEAST2.681e-1652.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
UCRP_MOUSE2.509e-1432.64Ubiquitin cross-reactive protein OS=Mus musculus G... [more]
UBD_RAT7.301e-1430.82Ubiquitin D OS=Rattus norvegicus GN=Ubd PE=2 SV=1[more]
UBD_MOUSE6.180e-1330.41Ubiquitin D OS=Mus musculus GN=Ubd PE=2 SV=1[more]
UCRP_HUMAN5.232e-1232.19Interferon-induced 17 kDa protein OS=Homo sapiens ... [more]
ANUB1_HUMAN1.166e-1146.05AN1-type zinc finger and ubiquitin domain-containi... [more]
UCRP_BOVIN3.391e-1130.34Ubiquitin cross-reactive protein OS=Bos taurus GN=... [more]
OASL_HUMAN3.391e-1134.5659 kDa 2'-5'-oligoadenylate synthetase-like protei... [more]

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Properties
Property NameValue
Genbank descriptionC08002G05SK PhyRootSw1 Citrus sinensis cDNA clone C08002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300835 ID=CX300835; Name=CX300835; organism=Citrus sinensis; type=EST; length=466bp
GCACGAGGGGAAAGACCATCACCTTAGAAGTCGAGCCTTCCGACTCCATC
GATAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATCCCACCAGATCA
GCAACGTTTGATCTTCGCGGGAAAGCAATTGGAGGACGGTCGCACTTTGA
GCGACTACAACATCCAGAAGGAATCCACCTTACACTTGGTGTTGCGTCTT
CGTGGAGGAATGCAAATCTTCGTCAAGACCTTAACCGGAAAGACCATCAC
CTTAGAAGTCGAGCCTTCCGACTCCATCGATAATGTCAAGCAAAAGATTC
AAGACAAGGAAGGTATCCCACCAGATCAGCAACGTTTGATCTTCGCGGGA
AAGCAATTGGAGGACGGTCGCACTTTGAGCGACTACAACATCCAGAAGGA
ATCCACCTTACACTTGGTGTTACGTCTTCGTGGAGGCTACTAAGTTAAAT
GAGTTTTTGATAAATG
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