CX300757

Overview
NameCX300757
Unique NameCX300757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 214.157 bits (544), Expect = 5.308e-55
Identity = 106/171 (61.99%), Postives = 132/171 (77.19%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGD------TTAEDSGVAIDKA 495
            L+ EDVQG N LTNFHGMD+TRDK+CS+++KWQT+IEA VDV+TTDGY+LRLF + FTKK+ NQ  R T YAQ  QVR IRKKM EIMT E    DLKE+V K I  PDSIG ++EK CQSI+PL +V +RKVKMLKKPKF++ KLMELHG+       T +++G  +++A
Sbjct:   86 LITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQ-IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLI--PDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERA 253          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_COPC7 (40S ribosomal protein S1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.308e-55
Identity = 107/164 (65.24%), Postives = 134/164 (81.71%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDK 492
            L  +++QG N LTNFHGMD T DKL SL+RKWQTL+EA VDV+TTDGY+LRLFAI FTK++  Q  ++T YAQ+ QVR +RKKMFEI+T EA+ CDLKELVQKF+  P++IG EIEK  +SI+PLQNV IRK K+LK PKFDV+KL+ELHGD+T ++SG  + K
Sbjct:   86 LRVDEIQGRNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFTKRRPTQVKKTT-YAQTAQVRELRKKMFEIITREATSCDLKELVQKFV--PEAIGREIEKASRSIYPLQNVYIRKAKILKAPKFDVSKLLELHGDST-DESGTRVTK 245          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 9.054e-55
Identity = 106/171 (61.99%), Postives = 131/171 (76.61%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGD------TTAEDSGVAIDKA 495
            L+ EDVQG N LTNFHGMD+TRDK+CS+++KWQT+IEA VDV+TTDGY+LRLF + FTKK+ NQ  R T YAQ  QVR IRKKM EIMT E    DLKE+V K I  PDSIG +IEK CQSI+PL +V +RKVKMLKKPKF++ KLMELHG+         +++G  +++A
Sbjct:   86 LITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQ-IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLI--PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERA 253          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.054e-55
Identity = 114/166 (68.67%), Postives = 131/166 (78.92%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDKAA 498
            L AEDVQG NVLTNF GMD T DKL SL+RKWQTLIEA VDV+TTD Y LRLF IAFTKK+ NQ  + TCYAQS Q+R IR+KM EIMT  A+ CDLKELV+KFI  P+SIG EIEK   SI+PLQNV IRKVK+LK PKFD+ KLME+HGD  +ED G  +++ A
Sbjct:   86 LRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQ-NKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFI--PESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGD-YSEDVGTKLERPA 247          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.182e-54
Identity = 106/171 (61.99%), Postives = 132/171 (77.19%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGD------TTAEDSGVAIDKA 495
            L+ EDVQG N LTNFHGMD+TRDK+CS+++KWQT+IEA VDV+TTDGY+LRLF + FTKK+ NQ  R T YAQ  QVR IRKKM EIMT E    DLKE+V K I  PDSIG +IEK CQSI+PL +V +RKVKMLKKPKF++ KLMELHG+       + +++G  +++A
Sbjct:   86 LITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQ-IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLI--PDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGTKVERA 253          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.182e-54
Identity = 111/166 (66.87%), Postives = 131/166 (78.92%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDKAA 498
            L AEDVQG NVLTNF GMD+T DKL SL++KWQ+LIEA VDV+TTD + LR+F I FTKK+ NQ  R TCYAQS Q++ IR+KM EIM  +A  CDLKELVQKFI  P+SIG EIEK   SI+PLQNV IRKVK+LK PKFD+ KLME+HGD  +ED GV +D+ A
Sbjct:   86 LRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKR-TCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFI--PESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGD-YSEDVGVKLDRPA 247          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.544e-54
Identity = 106/171 (61.99%), Postives = 131/171 (76.61%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGD------TTAEDSGVAIDKA 495
            L+ EDVQG N LTNFHGMD+TRDK+CS+++KWQT+IEA VDV+TTDGY+LRLF + FTKK+ NQ  R T YAQ  QVR IRKKM EIMT E    DLKE+V K I  PDSIG +IEK CQSI+PL +V +RKVKMLKKPKF++ KLMELHG+         +++G  +++A
Sbjct:   86 LITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQ-IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLI--PDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVERA 253          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.544e-54
Identity = 111/172 (64.53%), Postives = 131/172 (76.16%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDKAAAANTVK 516
            L AEDVQG NVLTNF+GMD T DKL SL+RKWQTLIEA VDV+TTD Y LR+F I FTK++ NQ  R TCYAQS Q+R IR+KM EIM  +A+ CDLKELV+KFI  P+ IG EIEK   SI+PLQNV IRKVK+LK PKFD+ KLME+HGD  +ED G  ++  A    V+
Sbjct:   86 LRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKR-TCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFI--PEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGD-YSEDVGTKVESPADETVVE 253          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.634e-54
Identity = 107/161 (66.46%), Postives = 130/161 (80.75%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGD-TTAEDSGV 480
            L+AE+VQG NVLTNF GM +TRDKLCS+++KWQTLIEA+VDV+TTDGY+LR+FAI FTKK+ NQ  + TCYAQ  QV+ IRKKM EI++ E S  D+KE+V K I  PDSIG +IEK CQ I+PL +VLI KVK+LKKPKFDV KLMELHG+ +T    GV
Sbjct:   86 LIAEEVQGRNVLTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTTDGYLLRVFAIGFTKKRNNQ-VKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLI--PDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGV 243          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_DANRE (40S ribosomal protein S3a OS=Danio rerio GN=rps3a PE=2 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.440e-54
Identity = 109/174 (62.64%), Postives = 133/174 (76.44%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGD---TTAE------DSGVAIDKA 495
            LV EDVQG N LTNFHGMD+TRDK+CS+++KWQT+IEA VDV+TTDGY+LRLF + FTKK+ NQ  R T YAQ  QVR IRKKM EIMT E    DLKE+V K I  PDS+G +IEK CQSI+PL +V +RKVKMLKKPKF++ KLMELHG+   T+A       D+G  +++A
Sbjct:   86 LVTEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQ-IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLI--PDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERA 256          
The following BLAST results are available for this feature:
BLAST of CX300757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
RS3A_GECJA5.308e-5561.9940S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A_COPC75.308e-5565.2440S ribosomal protein S1 OS=Coprinopsis cinerea (s... [more]
RS3A_MOUSE9.054e-5561.9940S ribosomal protein S3a OS=Mus musculus GN=Rps3a... [more]
RS3A1_VITVI9.054e-5568.6740S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A_TAEGU1.182e-5461.9940S ribosomal protein S3a OS=Taeniopygia guttata G... [more]
RS3A_HELAN1.182e-5466.8740S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A_XENTR1.544e-5461.9940S ribosomal protein S3a OS=Xenopus tropicalis GN... [more]
RS3A_CICAR1.544e-5464.5340S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]
RS3A_APLCA2.634e-5466.4640S ribosomal protein S3a OS=Aplysia californica G... [more]
RS3A_DANRE3.440e-5462.6440S ribosomal protein S3a OS=Danio rerio GN=rps3a ... [more]

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Properties
Property NameValue
Genbank descriptionC08001H07SK PhyRootSw1 Citrus sinensis cDNA clone C08001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300757 ID=CX300757; Name=CX300757; organism=Citrus sinensis; type=EST; length=681bp
CTCGTCGCTGAGGATGTTCAAGGCACCAATGTCTTGACCAACTTCCATGG
CATGGATATCACCCGTGATAAATTATGCTCTTTAATCCGCAAATGGCAGA
CTTTAATCGAGGCTAGCGTCGACGTCCGAACAACTGACGGATATGTCTTA
AGACTCTTCGCCATCGCCTTCACCAAGAAACAACAGAACCAAGCTGCTCG
CTCCACTTGCTATGCTCAATCTGGTCAAGTCAGAAATATCCGCAAGAAGA
TGTTCGAGATCATGACAGAGGAAGCTTCCAAGTGCGACTTAAAGGAACTT
GTTCAGAAATTCATCGCTCACCCTGACTCCATCGGTGCTGAGATCGAGAA
GAAGTGTCAATCCATCTTCCCTCTTCAAAACGTCCTCATCCGCAAGGTGA
AGATGTTGAAGAAGCCAAAGTTCGATGTGACAAAGTTAATGGAATTACAC
GGTGACACCACCGCTGAGGACAGTGGCGTGGCTATTGATAAGGCCGCCGC
TGCTAACACTGTCAAGGCTTTGAAGGGATCTGGAGGCAGATTGTAAGTGA
GATTGATGATATAAACGACACCTTCTCCACATCATCGCTCTATTTGTTGG
TACTACGATTCAATAACAATACTTCCACAACTAATAAAACTAATAACAAA
AAACCTCATAAAAAAAAAAAAAAAAAAAAAA
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