CX300755

Overview
NameCX300755
Unique NameCX300755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 2
Query:    8 KDKSLLVVKTPNAVNPLVWDY------SSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 208
            KD  L VV T N  NPL+ +       + +L +DVWEHAYYL++QNRRPDY++ F + +V+W+ VSKR   AK
Sbjct:  140 KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWN-VVNWDEVSKRYAAAK 211          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 2
Query:   11 DKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 196
            D  L +V T NA  PL  D + LLT+DVWEHAYY+D++N RP+Y+  F   LV+WE V+K L
Sbjct:  131 DGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPNYLEHFW-ALVNWEFVAKNL 191          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 2
Query:   11 DKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 196
            D  L +V T NA  PL  D + LLT+DVWEHAYY+D++N RP+Y+  F   LV+WE V+K L
Sbjct:  131 DGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPNYLEHFW-ALVNWEFVAKNL 191          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.809e-12
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 2
Query:   11 DKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 196
            D  L ++KT NA  P+      LL  DVWEHAYY+D++N+RPDY+ +F+  +++W+ V   L
Sbjct:  146 DNRLQIIKTANAGTPIAHGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVEDNL 207          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM_STAS1 (Superoxide dismutase [Mn/Fe] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sodA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 2
Query:   17 SLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 208
            +L +V TPN  NPL    + +L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +    AK
Sbjct:  137 NLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 2
Query:    5 EKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETA 205
            +KD  L +V TPN  NP+    + +L +DVWEHAYYL +QN+RPDYI  F + +V+W  V +  E A
Sbjct:  134 DKDGKLEIVSTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYIDAFWN-VVNWNKVDELYEAA 199          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 2
Query:   20 LLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 196
            L +VKT NA  P+      LL  DVWEHAYY+D++N+RPDY+ +F+  +++WE V   L
Sbjct:  149 LQIVKTANAGTPIANGMQPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWEFVENNL 207          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM_STAEP (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis GN=sodA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 2
Query:   20 LLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 208
            L +V TPN  NPL    + +L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +    AK
Sbjct:  138 LEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 2
Query:   20 LLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 211
            L +  TPN  +P++   + +L +DVWEHAYYL +QNRRP+YI+ F + +V+W+ V+KR   AKA
Sbjct:  141 LEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPEYIAAFWN-IVNWDEVAKRYSEAKA 203          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_SHIFL (Superoxide dismutase [Fe] OS=Shigella flexneri GN=sodB PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 9.909e-12
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 2
Query:   11 DKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 196
            D  L +V T NA  PL  D + LLT+DVWEHAYY+D++N RP Y+  F   LV+WE V+K L
Sbjct:  131 DGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 191          
The following BLAST results are available for this feature:
BLAST of CX300755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
SODM_DEIRA5.809e-1249.32Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODF_SALTY5.809e-1253.23Superoxide dismutase [Fe] OS=Salmonella typhimuriu... [more]
SODF_SALTI5.809e-1253.23Superoxide dismutase [Fe] OS=Salmonella typhi GN=s... [more]
SODF_RICCN5.809e-1243.55Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODM_STAS17.587e-1251.56Superoxide dismutase [Mn/Fe] OS=Staphylococcus sap... [more]
SODM_STACA7.587e-1247.76Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]
SODF_RICBR7.587e-1247.46Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODM_STAEP9.909e-1252.38Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_BACCA9.909e-1248.44Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]
SODF_SHIFL9.909e-1253.23Superoxide dismutase [Fe] OS=Shigella flexneri GN=... [more]

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Properties
Property NameValue
Genbank descriptionC08001H05SK PhyRootSw1 Citrus sinensis cDNA clone C08001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300755 ID=CX300755; Name=CX300755; organism=Citrus sinensis; type=EST; length=540bp
ATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCCAATGCTGTCA
ATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGATGTATGGGAG
CATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATTACATATCAGT
TTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAAAGACTGGAAA
CTGCCAAAGCTCCAGCTACCTAGATTGAAATGGAAGAATGATGAAGGAAG
ATGAAGAGAAAATAAATAATAAGCTGCTTGGTAGCAACACTATGTTGTGC
TGATGATACTTTGCTGAACAATAAAAATAGTTAGGTCTTTGGTACACACT
ACTTTGTGATTAGTAATCTCTATTGTCAAAGTGTTGGTTTCTTCTTATAA
CAATCAGGGTATAATAAAACCTATCAAAGTATATGTATGAGTTACTTTTT
GAAAATAGTTTTTGGATGACTAATAATACTTTCAGGCCTGTTTAGTATGT
TGAATACTATTATCTTGGACTATAAAAAAAAAAAAAAAAA
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