CX300751

Overview
NameCX300751
Unique NameCX300751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: RL28B_SCHPO (60S ribosomal protein L28-B OS=Schizosaccharomyces pombe GN=rpl28b PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.718e-24
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            KYHPGYFGKVGMR FH ++N    P VN+D+LW++VP + + K    N    P+I+V Q GY KVLGKG LP+  PV+++ + VS+ AE+KIK+AGG V L A
Sbjct:   47 KYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT-PVIIQTRYVSRRAEEKIKQAGGVVELIA 148          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: RL28A_SCHPO (60S ribosomal protein L28-A OS=Schizosaccharomyces pombe GN=rpl28a PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 4.718e-24
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            KYHPGYFGKVGMR FH ++N    P VN+D+LW+++P + + K    N    P+I+V Q GY KVLGKG LPE  PV+V+ + VS+ AE+KIK+AGG V L A
Sbjct:   47 KYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET-PVIVQTRYVSRRAEEKIKQAGGVVELIA 148          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: RL27A_DROME (60S ribosomal protein L27a OS=Drosophila melanogaster GN=RpL27A PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.051e-23
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKD---NVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            KYHPGYFGKVGMR FH  R     P +N+DKLWS+V  +  A+  K+     P+ID+ +FGY+K+LG+G LP  +PV+VKAK  SK AE KIK+AGG  +L+A
Sbjct:   48 KYHPGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA-RPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: R27A1_ARATH (Putative 60S ribosomal protein L27a-1 OS=Arabidopsis thaliana GN=RPL27AA PE=5 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.191e-21
Identity = 59/98 (60.20%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   34 PGYFGK--VGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 321
            PG  G   VGMRYFHKLRNKF+C IVN+DKLWSMV                          LGKG LPEN+PVVVKAKLVS T EKKIKEAG AVVLT
Sbjct:   29 PGSRGNAGVGMRYFHKLRNKFYCQIVNLDKLWSMV--------------------------LGKGFLPENKPVVVKAKLVSNTDEKKIKEAGSAVVLT 100          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: RL27A_TRYBB (60S ribosomal protein L27a OS=Trypanosoma brucei brucei GN=RPL27A PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.855e-20
Identity = 52/101 (51.49%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNV-PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            KYHPGYFGK GM ++HK +N    P +N+D L  ++ +D   KA K  V P+ID+   GY K+LG G L    P +VKA+ VSK A+KKI++AGGAVVL A
Sbjct:   47 KYHPGYFGKCGMNHYHKKKNTTWKPTINLDNLTKLMAKDEAMKAKKGEVLPVIDLLANGYSKLLGNGHL--QAPCIVKARWVSKLADKKIRKAGGAVVLQA 145          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: RL27A_TENMO (60S ribosomal protein L27a OS=Tenebrio molitor GN=RpL27A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.598e-18
Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKAS---KDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 324
            KYHPGYFGK+GMR +H  RN    P +N+DKLW++V +  ++K     +   P+ID+ + GY+K+LGKG    N   ++K        E KIK  GGA VL+A
Sbjct:   47 KYHPGYFGKLGMRNYHLRRNSKWAPAINLDKLWTLVSEQTRSKYQNHPEGKAPVIDIVKAGYYKLLGKGACLTNLS-LLKPSFSLNRLEDKIKAVGGACVLSA 148          
BLAST of CX300751 vs. ExPASy Swiss-Prot
Match: RL27A_ENCCU (60S ribosomal protein L27a OS=Encephalitozoon cuniculi GN=RPL27A PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 36/101 (35.64%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   25 KYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAK--ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLT 321
            ++HP Y GK GMR +H+  N  +   ++  +LW M+P++ +     + + VP+IDV +FGY  V+G G L   +P+VVKA+  + +A+++I + GG  ++T
Sbjct:   47 RFHPDYHGKRGMRVYHRKENSDYARPISSARLWGMIPKEQRYDFLDNPEKVPVIDVREFGYHVVVG-GKLSLERPIVVKARYFTPSAKEEITKVGGKWIIT 146          
The following BLAST results are available for this feature:
BLAST of CX300751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL28B_SCHPO4.718e-2453.4060S ribosomal protein L28-B OS=Schizosaccharomyces... [more]
RL28A_SCHPO4.718e-2454.3760S ribosomal protein L28-A OS=Schizosaccharomyces... [more]
RL27A_DROME1.051e-2354.3760S ribosomal protein L27a OS=Drosophila melanogas... [more]
R27A1_ARATH2.191e-2160.20Putative 60S ribosomal protein L27a-1 OS=Arabidops... [more]
RL27A_TRYBB1.855e-2051.4960S ribosomal protein L27a OS=Trypanosoma brucei b... [more]
RL27A_TENMO6.598e-1843.6960S ribosomal protein L27a OS=Tenebrio molitor GN=... [more]
RL27A_ENCCU2.869e-1335.6460S ribosomal protein L27a OS=Encephalitozoon cuni... [more]

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Properties
Property NameValue
Genbank descriptionC08001H01SK PhyRootSw1 Citrus sinensis cDNA clone C08001H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300751 ID=CX300751; Name=CX300751; organism=Citrus sinensis; type=EST; length=521bp
CTCGTGCCGAATTCGGCACGAGGCAAGTACCATCCGGGTTATTTTGGTAA
AGTCGGTATGAGGTACTTCCACAAACTCCGCAACAAATTCCACTGCCCCA
TCGTCAACATCGACAAGCTCTGGTCCATGGTCCCACAAGATGTGAAAGCA
AAGGCCAGCAAGGACAATGTTCCGATGATTGATGTCACTCAGTTCGGCTA
CTTTAAGGTTTTGGGCAAAGGTGTTTTGCCGGAGAACCAGCCCGTCGTTG
TCAAGGCCAAGCTCGTTTCTAAGACCGCTGAGAAGAAGATCAAAGAGGCT
GGTGGCGCTGTTGTGCTCACAGCTTAGGGTTATTTTGGTAACTCTCCCTT
GTCTAGGGATTTTGTTTTATTCTGGGATCTGTTGAGACTTATTTAAATCA
CAATGTTTTTATCTTTTTTTTTGGGTATATCTCTCGCTTAATGATTAAAT
GTGACCTGAATCTCATTTTATTTGACTTCTTGGTGCATTTAAGCAGTTTT
TTATAAAAAAAAAAAAAAAAA
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