CX300743

Overview
NameCX300743
Unique NameCX300743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTD_PHYPO (Actin, spherule isoform OS=Physarum polycephalum GN=ARDD PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 4.706e-27
Identity = 68/198 (34.34%), Postives = 113/198 (57.07%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD-ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKA 593
            MFE+++ PAM++ +  +L+  ASG  TG+ +  GDG      I  G ALP+ I R D  GRDL  Y    + +RG  +F T+AE +I  D+ +KL  +A D      +   L+YELPDG +++I NER++  E LF+   +G      +G+ +    ++ +   +   R D+  N+++SG  T+ PG A+R+++E+ A
Sbjct:  121 MFESFSAPAMYVAIQAVLSLRASGRTTGIVLDSGDGASHAVPIYEGCALPHAILRIDAAGRDLTHYLRLMLAERG-YAFNTTAELEIVRDIKEKLAYVALDFEQEMQTASSLNYELPDGRVVTIGNERFRCSEVLFQSCFLGM---ESAGIPETTYNSIMKCDVD--IRKDLFGNLVLSGGTTMVPGIADRVQKELTA 312          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT25_DICDI (Putative actin-25 OS=Dictyostelium discoideum GN=act25 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.146e-27
Identity = 70/205 (34.15%), Postives = 113/205 (55.12%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD-------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+  PA+++    +L+ Y++G  TG+ +  GDGV  T  +  GY L   I   D  GRDL  Y    +  RG   F T  E +I   + +KL  +A D       AS + +  K SYELPDG++++I NER++ PEALFRP          +G+ + +  ++ +   +D  R D+  ++++SG  T++PG  +R+ +E+ AL
Sbjct:  139 MFETFKTPAIYVANQGVLSLYSTGLTTGIVMNSGDGVSHTVPVYEGYILRQAILSLDLAGRDLTDYMNELLTDRG-YYFTTKGEKEIVRGIKEKLSYVALDFEAEMQIASASPALEK-SYELPDGQVITIGNERFRCPEALFRP---------YTGIHETIYNSIMKC--DDDIRKDLFGSVVLSGGSTMFPGIVDRMNKELTAL 330          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTZ_PNECA (Actin-2 OS=Pneumocystis carinii PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.027e-27
Identity = 75/210 (35.71%), Postives = 115/210 (54.76%), Query Frame = 3
Query:    6 FETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD--------ASLTHSCGK-----LSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            FET+NVPA+F  +  +L+ YASG  TG+ +  GDGV     I  G+A+P+ I R D  GRD+ +Y +  + ++    F TSAE +I   + +K   +  D         + + S GK       ++LPDG +L +  ER++ PE LF P ++GS Y   SG+  +V   +SRV  +   R  +  NI++SG  TL  GF +RL  E++ L
Sbjct:  128 FETFNVPALFTSIQAVLSLYASGRTTGVVLDSGDGVTHAVPIYEGFAMPSAIRRIDIAGRDVTEY-LQLLLRKSGTIFHTSAEKEIVRIIKEKCSYVTLDPRKEEKEWINASISGGKDYTKEEEFKLPDGNVLRLGAERFRAPEILFDPEIIGSEY---SGIHQVVVDAISRVDLD--LRKSLFGNIVLSGGSTLTRGFGDRLLSEIRRL 331          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTY_BOVIN (Beta-centractin OS=Bos taurus GN=ACTR1B PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.048e-26
Identity = 69/199 (34.67%), Postives = 113/199 (56.78%), Query Frame = 3
Query:    6 FETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA--PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            FET+NVPA+FI +  +L+ YA+G  TG+ +  GDGV     +  G+A+P++I R D  GRD+++Y    + + G   F TSAEF++   + ++   ++  P         K+ Y LPDG  L++   R++ PE LF+P L+G   D   G+ +++   + +   +   R  +  NI++SG  TL+ GF +RL  EVK L
Sbjct:  129 FETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPVYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEG-ADFHTSAEFEVVRTIKERACYLSINPQKDEALETEKVQYTLPDGSTLNVGPARFRAPELLFQPDLIG---DESEGLHEVLVFAIHK--SDMDLRRTLFANIMLSGGSTLFKGFGDRLLSEVKKL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTZ_RAT (Alpha-centractin OS=Rattus norvegicus GN=Actr1a PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.369e-26
Identity = 73/200 (36.50%), Postives = 109/200 (54.50%), Query Frame = 3
Query:    6 FETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGE-RSFLTSAEFQIAGDVIQKLGLIA--PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            FET+NVPA+FI +  +L+ YA+G  TG+ +  GDGV     I  G+A+P++I R D  GRD++++    +Y R E   F +S+EF+I   + ++   ++  P    T    K  Y LPDG  + I   R++ PE LFRP L+G   + I  V     Q       +   R  +  NI++SG  TL+ GF +RL  EVK L
Sbjct:  129 FETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRIDIAGRDVSRFL--RLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQYYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQ-----KSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTZ_MOUSE (Alpha-centractin OS=Mus musculus GN=Actr1a PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.369e-26
Identity = 73/200 (36.50%), Postives = 109/200 (54.50%), Query Frame = 3
Query:    6 FETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGE-RSFLTSAEFQIAGDVIQKLGLIA--PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            FET+NVPA+FI +  +L+ YA+G  TG+ +  GDGV     I  G+A+P++I R D  GRD++++    +Y R E   F +S+EF+I   + ++   ++  P    T    K  Y LPDG  + I   R++ PE LFRP L+G   + I  V     Q       +   R  +  NI++SG  TL+ GF +RL  EVK L
Sbjct:  129 FETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRIDIAGRDVSRFL--RLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQYYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQ-----KSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTZ_MACFA (Alpha-centractin OS=Macaca fascicularis GN=ACTR1A PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.369e-26
Identity = 73/200 (36.50%), Postives = 109/200 (54.50%), Query Frame = 3
Query:    6 FETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGE-RSFLTSAEFQIAGDVIQKLGLIA--PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            FET+NVPA+FI +  +L+ YA+G  TG+ +  GDGV     I  G+A+P++I R D  GRD++++    +Y R E   F +S+EF+I   + ++   ++  P    T    K  Y LPDG  + I   R++ PE LFRP L+G   + I  V     Q       +   R  +  NI++SG  TL+ GF +RL  EVK L
Sbjct:  129 FETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRIDIAGRDVSRFL--RLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQYYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQ-----KSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTZ_HUMAN (Alpha-centractin OS=Homo sapiens GN=ACTR1A PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.369e-26
Identity = 73/200 (36.50%), Postives = 109/200 (54.50%), Query Frame = 3
Query:    6 FETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGE-RSFLTSAEFQIAGDVIQKLGLIA--PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            FET+NVPA+FI +  +L+ YA+G  TG+ +  GDGV     I  G+A+P++I R D  GRD++++    +Y R E   F +S+EF+I   + ++   ++  P    T    K  Y LPDG  + I   R++ PE LFRP L+G   + I  V     Q       +   R  +  NI++SG  TL+ GF +RL  EVK L
Sbjct:  129 FETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRIDIAGRDVSRFL--RLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQYYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQ-----KSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTZ_CANFA (Alpha-centractin OS=Canis familiaris GN=ACTR1A PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.369e-26
Identity = 73/200 (36.50%), Postives = 109/200 (54.50%), Query Frame = 3
Query:    6 FETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGE-RSFLTSAEFQIAGDVIQKLGLIA--PDASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            FET+NVPA+FI +  +L+ YA+G  TG+ +  GDGV     I  G+A+P++I R D  GRD++++    +Y R E   F +S+EF+I   + ++   ++  P    T    K  Y LPDG  + I   R++ PE LFRP L+G   + I  V     Q       +   R  +  NI++SG  TL+ GF +RL  EVK L
Sbjct:  129 FETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRIDIAGRDVSRFL--RLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKAQYYLPDGSTIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQ-----KSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT1_OXYFA (Actin, macronuclear OS=Oxytricha fallax PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.788e-26
Identity = 69/203 (33.99%), Postives = 117/203 (57.64%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRP-SLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVK 590
            +FET+N+PA+++ +  +L+ Y+ G  TG+    GDG+  T  I  G+++P+ +S     GRDL  +      +RG  +F +SAE +I  D+ +KL  +A +       S   S  + +YELP G++++I +ER++ PE LF+P  + G   DSI    DL  +++     +   R D+ +NII+SG  T+Y G  ERL +E++
Sbjct:  104 IFETFNLPALYVAIQAVLSLYSRGRTTGIVCDAGDGLTHTVPIYEGFSIPHAVSTIQLAGRDLTTFLAKLFTERG-YNFTSSAELEIVRDIKEKLCFLALNYESALKQSHDSSQFEKNYELPHGKVITIGSERFRCPEYLFKPLEMNGRELDSIQ---DLTYKSIQECDVD--VRRDLYQNIILSGGTTMYEGIGERLLKEIE 300          
The following BLAST results are available for this feature:
BLAST of CX300743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
ACTD_PHYPO4.706e-2734.34Actin, spherule isoform OS=Physarum polycephalum G... [more]
ACT25_DICDI6.146e-2734.15Putative actin-25 OS=Dictyostelium discoideum GN=a... [more]
ACTZ_PNECA8.027e-2735.71Actin-2 OS=Pneumocystis carinii PE=2 SV=1[more]
ACTY_BOVIN1.048e-2634.67Beta-centractin OS=Bos taurus GN=ACTR1B PE=2 SV=1[more]
ACTZ_RAT1.369e-2636.50Alpha-centractin OS=Rattus norvegicus GN=Actr1a PE... [more]
ACTZ_MOUSE1.369e-2636.50Alpha-centractin OS=Mus musculus GN=Actr1a PE=2 SV... [more]
ACTZ_MACFA1.369e-2636.50Alpha-centractin OS=Macaca fascicularis GN=ACTR1A ... [more]
ACTZ_HUMAN1.369e-2636.50Alpha-centractin OS=Homo sapiens GN=ACTR1A PE=1 SV... [more]
ACTZ_CANFA1.369e-2636.50Alpha-centractin OS=Canis familiaris GN=ACTR1A PE=... [more]
ACT1_OXYFA1.788e-2633.99Actin, macronuclear OS=Oxytricha fallax PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC08001G05SK PhyRootSw1 Citrus sinensis cDNA clone C08001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300743 ID=CX300743; Name=CX300743; organism=Citrus sinensis; type=EST; length=596bp
TGATGTTCGAAACGTATAACGTACCAGCAATGTTTATAGAAGTACCGAAT
ATCCTAAATCAATACGCGTCAGGCACCAAAACTGGATTGACGGTGTGTTG
TGGTGATGGCGTGATGGTGACGCAAGCGATCAGCAACGGTTATGCGTTGC
CTAATACTATTTCGCGCAGCGATTTCGGTGGTCGGGATCTGAATCAGTAT
TTTATATCGACGATGTACCAACGCGGCGAGCGATCGTTTCTCACGTCTGC
CGAGTTTCAGATCGCTGGCGATGTCATTCAAAAATTGGGTTTGATCGCTC
CCGATGCTTCTTTAACGCATTCTTGTGGCAAACTAAGCTACGAGCTACCT
GATGGCGAGATACTATCGATACAGAACGAAAGATATCAAATACCTGAAGC
TTTATTCAGACCTTCGTTGATGGGATCGAGCTACGATTCGATTTCGGGCG
TCGCCGATCTCGTACAGCAGACCTTGTCACGTGTTCCTGAAGAGGACGGC
GCACGTGCTGATGTAGCGAAGAATATCATCGTATCGGGTGCGCCTACATT
ATATCCAGGTTTCGCAGAGCGTTTAGAACAAGAAGTCAAAGCATTG
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