CX300743

Overview
NameCX300743
Unique NameCX300743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTT2_HUMAN (Actin-related protein T2 OS=Homo sapiens GN=ACTRT2 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.266e-20
Identity = 62/202 (30.69%), Postives = 109/202 (53.96%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIA--PDASLTHSCGKL--SYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFE + VPA ++    +L  YAS   TGL V  GD V  T  I  GY+LP+ +++    GRD+ +  +  +   G  +F    +  +  D+ +KL  +A  P+  L+    ++   Y+LPDG I+S+ +  +Q PEALF P  +GS      G++++V  ++++   +   +  +   I++SG  TL+ G  +RL +E++ L
Sbjct:  127 MFENFGVPAFYLSDQAVLALYASACVTGLVVDSGDAVTCTVPIFEGYSLPHAVTKLHVAGRDITELLMQLLLASG-HTFPCQLDKGLVDDIKKKLCYVALEPEKELSRRPEEVLREYKLPDGNIISLGDPLHQAPEALFVPQQLGS---QSPGLSNMVSSSITKC--DTDIQKILFGEIVLSGGTTLFHGLDDRLLKELEQL 322          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACL7A_RAT (Actin-like protein 7A OS=Rattus norvegicus GN=Actl7a PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.765e-19
Identity = 65/203 (32.02%), Postives = 101/203 (49.75%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD----ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGA-RADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            +FET+N PAM I   + L+ Y+ G  +GL V  G GV     I  GY LP+   R D+ G DL  Y ++ M   G+    +     I  D+  K   +A D      +  S  ++ Y LPDG+ + +  ER+   E  F+PSL+ S          L  QT+S + + D A + D+  NI++ G  T+  GF  RL++E+ ++
Sbjct:  192 LFETFNTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVPIYEGYPLPSITGRLDYAGSDLTNYLMNLMNNCGKH--FSEDHLSIVEDIKTKCCFVALDPIEEKKIPPSEHEIHYTLPDGKEIRLGQERFLCSEMFFKPSLIKSMQ------LGLHTQTVSCLNKCDIALKRDLMGNILLCGGSTMLRGFPNRLQKELSSM 386          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACL7A_BOVIN (Actin-like protein 7A OS=Bos taurus GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.161e-19
Identity = 64/203 (31.53%), Postives = 100/203 (49.26%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD----ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGA-RADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            +FET+  PAM I   + L+ Y+ G  +GL V  G GV     I  GY LP+   R D+ G DL  Y +  M   G+    T  +  I  D+ +K   +A D      +  +   + Y LPDG+ + +  ER+   E  F+PSL+ S          L  QT+S + + D A + D+  NI++ G  T+  GF  RL++E+ ++
Sbjct:  190 LFETFKTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVPIYEGYPLPSITGRLDYAGSDLTTYLMCLMNTAGKH--FTEGQLGIVEDIKKKCCFVALDPIEEKKVPATEHMIQYTLPDGQAIYLCQERFLCSEMFFKPSLIKSMQ------LGLHTQTVSCLNKCDIALKRDLMGNILLCGGSTMLSGFPNRLQKELSSM 384          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACL7A_MACFA (Actin-like protein 7A OS=Macaca fascicularis GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.051e-18
Identity = 64/203 (31.53%), Postives = 100/203 (49.26%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDAS----LTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGA-RADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            +FE +N PAM I   + L+ Y+ G  +GL V  G GV     I  GY LP+   R D+ G DL  Y +  +   G     T  +  I  D+ +K   +A D +    +  S   + Y LPDG+ + +  ER+   E  F+PSL+ S          L  QT+S + + D A + D+  NI++ G  T+  GF  RL++E+ ++
Sbjct:  187 LFEAFNTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVPIYEGYPLPSITGRLDYAGSDLTAYLLGLLNSAGNE--FTQDQMGIVEDIKKKCCFVALDPTEEKRVPLSEHTIRYVLPDGKEIQLCQERFLCSEMFFKPSLIKSMQ------LGLHTQTVSCLNKCDIALKRDLMGNILLCGGSTMLSGFPNRLQKELSSM 381          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACL7A_HUMAN (Actin-like protein 7A OS=Homo sapiens GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.372e-18
Identity = 64/203 (31.53%), Postives = 99/203 (48.77%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD----ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGA-RADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            +FE +N PAM I   + L+ Y+ G  +GL V  G GV     I  GY LP+   R D+ G DL  Y +  +   G     T  +  I  D+ +K   +A D      +  S   + Y LPDG+ + +  ER+   E  F+PSL+ S          L  QT+S + + D A + D+  NI++ G  T+  GF  RL++E+ ++
Sbjct:  187 LFEAFNTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVPIYEGYPLPSITGRLDYAGSDLTAYLLGLLNSAGNE--FTQDQMGIVEDIKKKCCFVALDPIEEKKVPLSEHTIRYVLPDGKEIQLCQERFLCSEMFFKPSLIKSMQ------LGLHTQTVSCLNKCDIALKRDLMGNILLCGGSTMLSGFPNRLQKELSSM 381          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACL7A_MOUSE (Actin-like protein 7A OS=Mus musculus GN=Actl7a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.057e-18
Identity = 63/203 (31.03%), Postives = 100/203 (49.26%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD----ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGA-RADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            +FET+N PAM I   + L+ Y+ G  +GL V  G GV     I  GY LP+   R D+ G DL  Y ++ M   G+    +     I  D+  +   +A D      +     ++ Y LPDG+ + +  ER+   E  F+PSL+ S          L  QT+S + + D A + D+  NI++ G  T+  GF  RL++E+ ++
Sbjct:  192 LFETFNTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVPIYEGYPLPSITGRLDYAGSDLTTYLMNLMNNSGKH--FSEDHLGIVEDIKTRCCFVALDPIEEKKIPAPEHEIHYTLPDGKEIRLGQERFLCSEMFFKPSLIKSMQ------LGLHTQTVSCLNKCDIALKRDLMGNILLCGGSTMLRGFPNRLQKELSSM 386          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTL9_RAT (Actin-like protein 9 OS=Rattus norvegicus GN=Actl9 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.993e-18
Identity = 60/199 (30.15%), Postives = 102/199 (51.26%), Query Frame = 3
Query:    6 FETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAE-FQIAGDVIQKLGLIAPDASLTHSCGKLSY----ELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEV 587
            FE+ + PA+++   ++L+ YA+G   GL V  G GV  T  +  GY LP+ I R D  G  L ++    + +    SF    E      ++ Q+   +A D           +    +LPDG+++++  E +Q PE LF P    +S  S  G+  +V+ +LS VP+E   RAD+ +N+++ G  +L+ GF  R + E+
Sbjct:  162 FESLHSPAIYVASQSVLSVYANGRVNGLVVDTGHGVSYTVPVFQGYNLPSGIQRMDLAGHYLTKFLAEKILR---SSFAVKKEDMDTMENIKQQYCYVALDFQKEQGRPDEKFRRCLKLPDGQMITVGKELFQCPELLFHPP--DTSGPSSLGLPSMVEHSLSTVPQE--LRADMEQNVLLCGGSSLFTGFEGRFKTEL 353          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTL9_BOVIN (Actin-like protein 9 OS=Bos taurus GN=ACTL9 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.215e-18
Identity = 60/198 (30.30%), Postives = 98/198 (49.49%), Query Frame = 3
Query:    6 FETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASLTHSCGKL----SYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEV 587
            FE+ + PAM++   ++L+ YA G  +GL V  G GV  T  +  GY LP+   R D  G  L  +    +   G    L   +     ++  +   +APD     +  +L    + +LPDG  +++  E +Q PE LF P  +     S  GV  + QQ+LS+V  E   R D+A+N+++ G  +L+ GF  R + E+
Sbjct:  167 FESLSSPAMYVASQSVLSVYAHGRVSGLVVDTGHGVTYTVPVFQGYNLPHATQRLDLAGTHLTAFLAEMLL--GSGLPLGQQDLDTVENIKHRYCYVAPDFLKEQARPELECRQTLKLPDGRTVTLGKELFQCPELLFSPPEIPGL--SPVGVPTMAQQSLSKVAAE--LRTDLAQNVLLCGGSSLFTGFQARFQTEL 358          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT27_DICDI (Putative actin-27 OS=Dictyostelium discoideum GN=act27 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.215e-18
Identity = 59/196 (30.10%), Postives = 97/196 (49.49%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPDASL----THSCGKLSYELPDGEILSIQNERYQIPEALFRP-SLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERL 575
            MFET+  PA+++E   + + Y SG  TG+ +  GD       +  G ALP+  S   F G DL       +   G      + E +I  D+ +KL  ++ D S       + GK SYELPDG++++I  E +  PE LF P +  G++ D   G+   +  ++ +    D    D+  N+++SG  T++PG   R+
Sbjct:  113 MFETFKTPAIYVENQAVFSIYNSGRMTGIVLDSGDSASHVVPVYEGLALPHATSSLGFAGCDLTDQMSLLLNDLG-----YNLEREIVRDIKEKLSYVSSDFSWEINDPSTLGK-SYELPDGQVITIDKELFACPEVLFLPYAFFGTNLD---GIDKAIYNSIMKC--NDDIHNDLYGNVVLSGGSTMFPGIEYRM 297          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTL9_MOUSE (Actin-like protein 9 OS=Mus musculus GN=Actl9 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.811e-18
Identity = 61/199 (30.65%), Postives = 96/199 (48.24%), Query Frame = 3
Query:    6 FETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD-----ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEV 587
            FE+ + PA+++   ++L+ YA G   GL V  G GV  T  +  GY LP+ I R D  G  L  +    +   G    L   +  +  ++      +APD     A     C K S +LPDG  +++  E +Q PE LF P  +     S  G+  + +Q+L +VP+E   R  VA+N+I+ G  +L+ G   R   E+
Sbjct:  166 FESLHSPALYVASQSVLSVYAHGRVNGLVVDTGHGVSYTVPVVQGYNLPHAIQRLDLAGNHLTAFLAEMLL--GSGFSLQQEDLDLVENIKHHYCYLAPDFQKEQARPDEEC-KQSLKLPDGRTVTLGKELFQCPELLFHPPEIPGL--SPIGLPAMAEQSLLKVPQE--LRPHVARNVILCGGSSLFTGLEGRFRAEL 357          
The following BLAST results are available for this feature:
BLAST of CX300743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
ACTT2_HUMAN4.266e-2030.69Actin-related protein T2 OS=Homo sapiens GN=ACTRT2... [more]
ACL7A_RAT2.765e-1932.02Actin-like protein 7A OS=Rattus norvegicus GN=Actl... [more]
ACL7A_BOVIN6.161e-1931.53Actin-like protein 7A OS=Bos taurus GN=ACTL7A PE=2... [more]
ACL7A_MACFA1.051e-1831.53Actin-like protein 7A OS=Macaca fascicularis GN=AC... [more]
ACL7A_HUMAN1.372e-1831.53Actin-like protein 7A OS=Homo sapiens GN=ACTL7A PE... [more]
ACL7A_MOUSE3.057e-1831.03Actin-like protein 7A OS=Mus musculus GN=Actl7a PE... [more]
ACTL9_RAT3.993e-1830.15Actin-like protein 9 OS=Rattus norvegicus GN=Actl9... [more]
ACTL9_BOVIN5.215e-1830.30Actin-like protein 9 OS=Bos taurus GN=ACTL9 PE=2 S... [more]
ACT27_DICDI5.215e-1830.10Putative actin-27 OS=Dictyostelium discoideum GN=a... [more]
ACTL9_MOUSE6.811e-1830.65Actin-like protein 9 OS=Mus musculus GN=Actl9 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC08001G05SK PhyRootSw1 Citrus sinensis cDNA clone C08001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300743 ID=CX300743; Name=CX300743; organism=Citrus sinensis; type=EST; length=596bp
TGATGTTCGAAACGTATAACGTACCAGCAATGTTTATAGAAGTACCGAAT
ATCCTAAATCAATACGCGTCAGGCACCAAAACTGGATTGACGGTGTGTTG
TGGTGATGGCGTGATGGTGACGCAAGCGATCAGCAACGGTTATGCGTTGC
CTAATACTATTTCGCGCAGCGATTTCGGTGGTCGGGATCTGAATCAGTAT
TTTATATCGACGATGTACCAACGCGGCGAGCGATCGTTTCTCACGTCTGC
CGAGTTTCAGATCGCTGGCGATGTCATTCAAAAATTGGGTTTGATCGCTC
CCGATGCTTCTTTAACGCATTCTTGTGGCAAACTAAGCTACGAGCTACCT
GATGGCGAGATACTATCGATACAGAACGAAAGATATCAAATACCTGAAGC
TTTATTCAGACCTTCGTTGATGGGATCGAGCTACGATTCGATTTCGGGCG
TCGCCGATCTCGTACAGCAGACCTTGTCACGTGTTCCTGAAGAGGACGGC
GCACGTGCTGATGTAGCGAAGAATATCATCGTATCGGGTGCGCCTACATT
ATATCCAGGTTTCGCAGAGCGTTTAGAACAAGAAGTCAAAGCATTG
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