CX300731

Overview
NameCX300731
Unique NameCX300731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 3.479e-67
Identity = 113/156 (72.44%), Postives = 137/156 (87.82%), Query Frame = 3
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            T++API+SA+KAYHEQ SV +IT + FE SN L KCDPR GKYMACC++YRGDVVPK+VN+A+A  K++ +VQFVDWCPTGFK GIN +PPTV+PGGDLA+V R++CM+SNTTAI EA +R+DHKFDLMYAKRAF+HWY+ EGMEE EF EAREDL
Sbjct:  277 TAFAPIVSADKAYHEQFSVSDITTACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPPTVMPGGDLAKVHRSICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREGMEEAEFLEAREDL 432          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 4.543e-67
Identity = 118/155 (76.13%), Postives = 133/155 (85.81%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISA KA HE  SV E+T S FEP+N + KCDPRHGKYMA C++YRGDVVP D ++AVAT+KTKRT+QFVDWCPTGFK GI YQPP  VP GDLA+V RAVCM+SNTTAIAEA S +  KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  271 AYAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 5.023e-66
Identity = 112/155 (72.26%), Postives = 134/155 (86.45%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +Y+PI+SA KA+HE  SV EITN  FEP N + KCDPR G+YMA C++YRGDV+P+DV +AV +IK++RT+QFVDWCPTGFK GI Y+PP  VPG  +A+V RAVCM+SNTT+IAEA SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  275 TYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 429          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 4.252e-65
Identity = 113/153 (73.86%), Postives = 132/153 (86.27%), Query Frame = 3
Query:   12 APIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            API+S +KA HE  SV E+T S FEP N + KCDPR GKYMAC ++YRGDVVPKD N+AVA IKTKRT+QFVDWCPTGFK GI  +PP  VPGGDLA+V+R++CM+SNTTAI+ A SR+DHKFDL+Y+KRAFVHWYVGEGMEEGEFSEAR+DL
Sbjct:  272 APIVSVDKAGHESNSVAEMTYSCFEPGNQMVKCDPRDGKYMACALLYRGDVVPKDTNAAVALIKTKRTIQFVDWCPTGFKLGICNEPPAHVPGGDLAKVKRSMCMLSNTTAISSAWSRLDHKFDLLYSKRAFVHWYVGEGMEEGEFSEARQDL 424          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 4.252e-65
Identity = 110/155 (70.97%), Postives = 134/155 (86.45%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISA++A+HE LSV +IT+  FE +N + KCDP  GKYMA C++YRGDVVPKDVN+A++++K KR + FVDWCPTGFK GINYQ P  V GGDLA+V RAVCM+SNTTAIAEA +R+DHKFDLMY+KRAFVHW+VGEGMEEGEF EAR+DL
Sbjct:  274 TYAPVISADRAHHEPLSVQDITHMCFEKANQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDL 428          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 4.252e-65
Identity = 112/155 (72.26%), Postives = 132/155 (85.16%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAPI+SA KA+HE  SV EITN  FEP N + KCDPR G+YMA C++YRGDV+P+DV +AV TIK KRT+QFVDWCPTGFK GI  +PP  + G ++A+V RAVCM+SNTT+IAEA SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  271 TYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 5.554e-65
Identity = 115/155 (74.19%), Postives = 132/155 (85.16%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +Y+P+ISA KA HE  SV E+T S FEP+N + KCDPRHGKYMA C++YRGDVVP D ++AVAT+KTKRT+QFVDWCPTGFK GI YQ P  VP GDLA+V RAVCM+SNTTAIAEA S +  KFDLM++KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  271 AYSPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQAPENVPNGDLAKVSRAVCMLSNTTAIAEAWSSLSLKFDLMHSKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 9.473e-65
Identity = 115/155 (74.19%), Postives = 131/155 (84.52%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISA KA HE  SV E+T S FEP+N + KCDPRHGKYMA C++Y GDVVP D ++AVA++KTKRT+QFVDWCPTGFK GI YQPP  VP GDLA+V RAVCM+SNTTAIAEA S +  KFDLMY+KRAFVHWYVGEGMEEGEFSEARE L
Sbjct:  271 AYAPVISAAKAAHEANSVQEMTMSCFEPNNQMVKCDPRHGKYMATCLLYGGDVVPNDAHAAVASLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREVL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 2.333e-63
Identity = 112/155 (72.26%), Postives = 127/155 (81.94%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            SYAPI+S  KA+HE  SV EITN+ FEP N + KCDPR GKYMA C++YRGDVV +DV +AVA +K K+TVQ VDWCPTGFK GI Y+PPT  P   L+ V RAVCM+SNTTAIA+A  RID KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDL
Sbjct:  273 SYAPILSKSKAHHESNSVGEITNACFEPGNQMVKCDPRVGKYMATCLLYRGDVVTRDVQTAVAQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLSSVSRAVCMLSNTTAIADAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDL 427          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 6.789e-63
Identity = 110/155 (70.97%), Postives = 125/155 (80.65%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            SY+P++S  KA+HE  SV EITN+ FEP N + KCDPR GKYMA C++YRGDVV +DV  AV  +K K+TVQ VDWCPTGFK GI Y+PPT  P   LA V RAVCM+SNTT+IAEA  RID KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDL
Sbjct:  272 SYSPVLSKSKAFHESNSVSEITNACFEPGNQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDL 426          
The following BLAST results are available for this feature:
BLAST of CX300731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBAL3_HUMAN3.479e-6772.44Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA2_NEUCR4.543e-6776.13Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA1_SCHPO5.023e-6672.26Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]
TBAA_SCHCO4.252e-6573.86Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]
TBA8_CAEEL4.252e-6570.97Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA2_SCHPO4.252e-6572.26Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA_GIBZE5.554e-6574.19Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA_SORMA9.473e-6574.19Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA_ASHGO2.333e-6372.26Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]
TBA1_YEAST6.789e-6370.97Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]

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Properties
Property NameValue
Genbank descriptionC08001F05SK PhyRootSw1 Citrus sinensis cDNA clone C08001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300731 ID=CX300731; Name=CX300731; organism=Citrus sinensis; type=EST; length=470bp
TGACCTCATACGCTCCAATCATCTCAGCAGAGAAGGCTTACCACGAGCAA
TTATCAGTGCACGAGATCACCAACTCGGTGTTCGAGCCATCAAACATGTT
GACGAAGTGCGATCCTCGTCACGGCAAGTACATGGCTTGCTGCATGATGT
ACCGTGGTGATGTGGTGCCAAAGGATGTGAACTCTGCAGTGGCCACCATC
AAGACAAAGCGCACAGTTCAATTCGTGGACTGGTGCCCAACCGGCTTCAA
GTGCGGTATCAACTACCAGCCACCAACAGTCGTTCCAGGAGGTGACTTGG
CTCGTGTGCAACGCGCTGTATGCATGGTTTCTAACACCACCGCAATCGCC
GAGGCCTTGTCTCGTATCGACCACAAGTTCGACTTGATGTACGCCAAGCG
TGCTTTCGTGCACTGGTACGTCGGAGAAGGTATGGAGGAAGGAGAGTTCT
CCGAGGCTCGTGAGGACTTG
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