CX300731

Overview
NameCX300731
Unique NameCX300731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 8.867e-63
Identity = 106/155 (68.39%), Postives = 132/155 (85.16%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP++SAE++ HEQ ++  +TN+ FE SNM+ KCDPR GK+MACCM+YRGDVVPKDVN+AV+ IK+KR +QFVDWCPTGFK GINY+ P  VP GDLA+  RA CM+SNTTAI+ A S + +KFDLM+ KRAFVHWYVGEGMEEGEF+EARE++
Sbjct:  282 AYAPLMSAERSAHEQHAITTLTNACFESSNMMVKCDPRAGKFMACCMLYRGDVVPKDVNAAVSAIKSKRHIQFVDWCPTGFKIGINYEKPAFVPDGDLAKTSRACCMLSNTTAISVAFSNLSYKFDLMFKKRAFVHWYVGEGMEEGEFTEARENI 436          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.512e-62
Identity = 111/155 (71.61%), Postives = 126/155 (81.29%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            SYAP+ S  +A HE  SV EIT S FEP N + KCDPR GKYMA C++YRGDVV +DV +AVA +K+K+TVQ VDWCPTGFK GI YQPPT + G +LA   RAVCM+SNTTAIAEA  RID KFDLMY+KRAFVHWYVGEGMEEGEF+EAREDL
Sbjct:  272 SYAPVFSKSRATHEANSVSEITQSCFEPGNQMVKCDPRTGKYMATCLLYRGDVVTRDVQNAVAQVKSKKTVQLVDWCPTGFKIGICYQPPTAIKGSELASASRAVCMLSNTTAIAEAWRRIDRKFDLMYSKRAFVHWYVGEGMEEGEFTEAREDL 426          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.512e-62
Identity = 109/155 (70.32%), Postives = 129/155 (83.23%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            SYAP++SA +  HEQ SV E+T S FE  N + KCD + GKYMACC++YRGDVVPKD  +AVA+IKTKRT+QFVDWCPTGFK G+  + P  VPGGDLA+V R++CM+SNTTAIA A +R+D+KFDLMY KRAFVHWYVGE MEEGEFSEAREDL
Sbjct:  269 SYAPLLSAPRRQHEQNSVEEMTFSCFESGNQMVKCDAKDGKYMACCLLYRGDVVPKDTQAAVASIKTKRTIQFVDWCPTGFKLGVCNEAPATVPGGDLAKVPRSLCMLSNTTAIAAAWNRLDYKFDLMYRKRAFVHWYVGEAMEEGEFSEAREDL 423          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 1.975e-62
Identity = 108/145 (74.48%), Postives = 126/145 (86.90%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEE 440
            +YAP+ISA KA HE  SV EITN+ FEP+N + KCDPR+GKYMA C++YRGDVV KDVN+AVA ++TKRT+QFVDWCPTGFK G+ YQPP  VP GDLA+V RAVCM+SNTT+IAEA  R+DHKFDLMY+KRAFVHWYVGEGMEE
Sbjct:   68 TYAPVISAAKAVHEANSVSEITNACFEPNNQMVKCDPRNGKYMATCLLYRGDVVTKDVNAAVAAVRTKRTIQFVDWCPTGFKLGVCYQPPQHVPHGDLAKVDRAVCMLSNTTSIAEAWPRLDHKFDLMYSKRAFVHWYVGEGMEE 212          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 2.580e-62
Identity = 110/155 (70.97%), Postives = 127/155 (81.94%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            SYAPI+S ++A HE  SV EITN+ FEP N + KCDP  GKYMA C++YRGDVV +DV  AV  +K K+TVQ VDWCPTGFK GI Y+PP+V+P  +LA V RAVCM+SNTTAIA+A  RID KFDLMYAKRAFVHWYVGEGMEEGEF+EAREDL
Sbjct:  272 SYAPILSKKRATHESNSVSEITNACFEPGNQMVKCDPTKGKYMANCLLYRGDVVTRDVQRAVEQVKNKKTVQMVDWCPTGFKIGICYEPPSVIPSSELANVDRAVCMLSNTTAIADAWKRIDQKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDL 426          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 4.119e-60
Identity = 104/155 (67.10%), Postives = 129/155 (83.23%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +Y+P++S EKA HE+LSV EITN+ FEP N + +CD R GKYMACC+++RGDV PK+ N+A A +K KRT QFV+WCPTGFK GIN + PTV+ G  +A V RAVC +SNTTAI+EA  R+++KFDLM++KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  267 AYSPMLSKEKAAHEKLSVQEITNACFEPQNQMVRCDTRKGKYMACCLLFRGDVNPKEANNATANVKAKRTNQFVEWCPTGFKVGINSRKPTVLDGEAMAEVSRAVCALSNTTAISEAWKRLNNKFDLMFSKRAFVHWYVGEGMEEGEFSEAREDL 421          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 5.035e-58
Identity = 105/148 (70.95%), Postives = 125/148 (84.46%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 449
            SY+P++SA KA HE  SV E+T   FEP+N + KCDPR+GKYMA C++YRGDVVPKDV++  AT+KTKRTVQFVD  PTGFK GI YQPPT+VP GDLA+V RA CM+SNTTAI+EA + + HKFDL+Y+KRAFVHWYVGEGMEEGEF
Sbjct:  272 SYSPVVSAGKASHESNSVMEVTIVCFEPNNQMVKCDPRNGKYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQPTGFKIGICYQPPTMVPNGDLAKVNRA-CMLSNTTAISEAWTALSHKFDLIYSKRAFVHWYVGEGMEEGEF 418          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 9.495e-57
Identity = 99/155 (63.87%), Postives = 122/155 (78.71%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            SYAP+IS+ ++ HE   V ++T    EP+N +  CDPR+GKYMA  ++YRGD VP+D   A+A++K K +   V+WCPTGFK GINYQ P  VPG +LA V R+V M+SNTTAI+EA SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  273 SYAPVISSNRSSHESFKVQDLTLQCAEPNNQMVVCDPRNGKYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPGSELAPVDRSVSMLSNTTAISEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 427          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 218.009 bits (554), Expect = 1.620e-56
Identity = 104/160 (65.00%), Postives = 123/160 (76.88%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVP-----GGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            SYAP+ISA K+ HE     E+T   FEP+N +  CDPR+GKYMA  ++YRGDVVP+D ++AVA +K K +   V+WCPTGFK GIN+Q P  VP      G LA V R+V M+SNTTAIAEA SR+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  272 SYAPVISATKSAHESFKTSELTLQCFEPNNQMVVCDPRNGKYMAVALLYRGDVVPRDTSAAVAALKAKSSFNLVEWCPTGFKIGINHQKPMSVPTASPADGGLASVDRSVSMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 431          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 2.115e-56
Identity = 98/157 (62.42%), Postives = 124/157 (78.98%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTK--RTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            SYAP+IS EKA+HE ++V  IT++VF   N++ KC P  GKYMACC+MYRGD+VPK+   AV  I+++  R V FVDW PTGFKCGIN Q P      ++A V+++VCM+SNTTAI++  SRI+HKFDLM+ KRAFVHWYVGEGMEEGEF+EAR+DL
Sbjct:  278 SYAPVISREKAHHETITVDNITSAVFSEKNIMAKCQPNLGKYMACCLMYRGDIVPKEAQKAVQNIRSEKSRNVSFVDWSPTGFKCGINNQAPVSTKDSEMAEVKKSVCMLSNTTAISQVFSRINHKFDLMFVKRAFVHWYVGEGMEEGEFAEARDDL 434          
The following BLAST results are available for this feature:
BLAST of CX300731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA4_DROME8.867e-6368.39Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBA_CANAL1.512e-6271.61Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]
TBAB_SCHCO1.512e-6270.32Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBAA_PNECA1.975e-6274.48Tubulin alpha chain (Fragment) OS=Pneumocystis car... [more]
TBA3_YEAST2.580e-6270.97Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]
TBA_ENCCU4.119e-6067.10Tubulin alpha chain OS=Encephalitozoon cuniculi GN... [more]
TBA_AJECA5.035e-5870.95Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA2_EMENI9.495e-5763.87Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA1_NEUCR1.620e-5665.00Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBA_DICDI2.115e-5662.42Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionC08001F05SK PhyRootSw1 Citrus sinensis cDNA clone C08001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300731 ID=CX300731; Name=CX300731; organism=Citrus sinensis; type=EST; length=470bp
TGACCTCATACGCTCCAATCATCTCAGCAGAGAAGGCTTACCACGAGCAA
TTATCAGTGCACGAGATCACCAACTCGGTGTTCGAGCCATCAAACATGTT
GACGAAGTGCGATCCTCGTCACGGCAAGTACATGGCTTGCTGCATGATGT
ACCGTGGTGATGTGGTGCCAAAGGATGTGAACTCTGCAGTGGCCACCATC
AAGACAAAGCGCACAGTTCAATTCGTGGACTGGTGCCCAACCGGCTTCAA
GTGCGGTATCAACTACCAGCCACCAACAGTCGTTCCAGGAGGTGACTTGG
CTCGTGTGCAACGCGCTGTATGCATGGTTTCTAACACCACCGCAATCGCC
GAGGCCTTGTCTCGTATCGACCACAAGTTCGACTTGATGTACGCCAAGCG
TGCTTTCGTGCACTGGTACGTCGGAGAAGGTATGGAGGAAGGAGAGTTCT
CCGAGGCTCGTGAGGACTTG
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