CX300683

Overview
NameCX300683
Unique NameCX300683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK2A_DICDI (Casein kinase II subunit alpha OS=Dictyostelium discoideum GN=casK PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.481e-24
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = -1
Query:  289 EKPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPI 438
            +KPW RF+T ENQHL   EA+D + +LLRYD  ERLT +EAM HPYF P+
Sbjct:  286 KKPWSRFITKENQHLAVPEAIDFLEKLLRYDPAERLTTREAMEHPYFKPL 335          

HSP 2 Score: 57.7658 bits (138), Expect = 6.481e-24
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = -3
Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHGHDN DQLVKI K+LGT+E Y YL+KY I +D     ++  + +K
Sbjct:  241 FHGHDNIDQLVKIVKILGTEEFYAYLDKYGIVVDHTILSIIGKHPKK 287          
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK2A_THEPA (Casein kinase II subunit alpha OS=Theileria parva GN=TP04_0659 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.144e-23
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = -1
Query:  280 EKPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPIRSN 438
            +KPW +FV  ENQHLVS E +DL++R+L YDH +R+T  EAM HP+F  I++N
Sbjct:  294 KKPWTKFVHHENQHLVSPEVMDLLDRMLVYDHTKRITPLEAMEHPFFNEIKNN 346          

HSP 2 Score: 59.3066 bits (142), Expect = 3.144e-23
Identity = 25/54 (46.30%), Postives = 40/54 (74.07%), Query Frame = -3
Query:  413 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARKAMGKICY 574
            F+GHDN+DQLVKIAKVLGT++L+ Y EKY ++    ++ +L ++++K   K  +
Sbjct:  249 FYGHDNYDQLVKIAKVLGTEDLHRYFEKYGLKFAPAYQEILGNHSKKPWTKFVH 302          
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK2A_THEAN (Casein kinase II subunit alpha OS=Theileria annulata GN=TA10630 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.144e-23
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = -1
Query:  280 EKPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPIRSN 438
            +KPW +FV  ENQHLVS E +DL++R+L YDH +R+T  EAM HP+F  I++N
Sbjct:  294 KKPWTKFVHHENQHLVSPEVMDLLDRMLVYDHTKRITPLEAMEHPFFNEIKNN 346          

HSP 2 Score: 59.3066 bits (142), Expect = 3.144e-23
Identity = 25/54 (46.30%), Postives = 40/54 (74.07%), Query Frame = -3
Query:  413 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARKAMGKICY 574
            F+GHDN+DQLVKIAKVLGT++L+ Y EKY ++    ++ +L ++++K   K  +
Sbjct:  249 FYGHDNYDQLVKIAKVLGTEDLHRYFEKYGLKFAPAYQEILGNHSKKPWTKFVH 302          
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK21_YEAST (Casein kinase II subunit alpha OS=Saccharomyces cerevisiae GN=CKA1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.257e-20
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = -1
Query:  286 KPWGRFVTPENQHLV-SEEALDLINRLLRYDHQERLTAQEAMAHPYFLPIR 435
            KPW RF+   N+HL  ++E +DLI+ LLRYDHQERLTA+EAM HP+F PIR
Sbjct:  317 KPWHRFINDGNKHLSGNDEIIDLIDNLLRYDHQERLTAKEAMGHPWFAPIR 367          

HSP 2 Score: 46.9802 bits (110), Expect = 2.257e-20
Identity = 25/47 (53.19%), Postives = 29/47 (61.70%), Query Frame = -3
Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHG  N DQLVKI KVLGT +   YL KY+I L  +F   +  Y RK
Sbjct:  272 FHGTSNTDQLVKIVKVLGTSDFEKYLLKYEITLPREFYD-MDQYIRK 317          
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK22_YEAST (Casein kinase II subunit alpha' OS=Saccharomyces cerevisiae GN=CKA2 PE=1 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 1.010e-16
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = -1
Query:  298 EKPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYF 438
            +K W  F+T E + L   E +DLI+ LLRYDHQERLTA+EAM H +F
Sbjct:  289 KKSWTHFITSETK-LAVPEVVDLIDNLLRYDHQERLTAKEAMDHKFF 334          

HSP 2 Score: 50.8322 bits (120), Expect = 1.010e-16
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = -3
Query:  431 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARKA 574
            F G  N DQLVKIA VLGT EL  YL KY + L S+++ ++  + +K+
Sbjct:  244 FKGSSNPDQLVKIATVLGTKELLGYLGKYGLHLPSEYDNIMRDFTKKS 291          
BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: Y6481_DICDI (Probable serine/threonine-protein kinase DDB_G0286481 OS=Dictyostelium discoideum GN=DDB_G0286481 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.683e-16
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = -1
Query:  298 QEKPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYF 441
            Q+  W RF+  EN  +   +A+D +++LLRYD  ERLTA+EAM HPYF
Sbjct:  550 QKSNWERFIPYENDDIAQPDAIDFLDKLLRYDPTERLTAKEAMKHPYF 597          

HSP 2 Score: 47.3654 bits (111), Expect = 1.683e-16
Identity = 19/41 (46.34%), Postives = 32/41 (78.05%), Query Frame = -3
Query:  452 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLL 574
            F+G +N+DQL+KI KVLGTD+L+++L+K+ + L  +   L+
Sbjct:  506 FNGDNNNDQLLKIVKVLGTDDLFNFLDKFGLSLTDEQSSLI 546          
The following BLAST results are available for this feature:
BLAST of CX300683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CSK2A_DICDI6.481e-2462.00Casein kinase II subunit alpha OS=Dictyostelium di... [more]
CSK2A_THEPA3.144e-2356.60Casein kinase II subunit alpha OS=Theileria parva ... [more]
CSK2A_THEAN3.144e-2356.60Casein kinase II subunit alpha OS=Theileria annula... [more]
CSK21_YEAST2.257e-2064.71Casein kinase II subunit alpha OS=Saccharomyces ce... [more]
CSK22_YEAST1.010e-1657.45Casein kinase II subunit alpha' OS=Saccharomyces c... [more]
Y6481_DICDI1.683e-1652.08Probable serine/threonine-protein kinase DDB_G0286... [more]

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Properties
Property NameValue
Genbank descriptionC08001B02SK PhyRootSw1 Citrus sinensis cDNA clone C08001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300683 ID=CX300683; Name=CX300683; organism=Citrus sinensis; type=EST; length=576bp
CTCGTGCCGAATTCGGCACGAGGTTTTTTTTTTTTTTTTTGAATCATTTC
AATTTGTTAATATTATGATATGATATAGATAGATGAAGGACTTTTAAACT
TCTCTGAAATCTCCTCCCACAAAACAAACAAAAGGTACAAACAAAAATCA
TGATTATGTTATTTATTATATATCACTCTTCCATCTCATCTCAACATTCC
GTTATGAGAGAGGAATAACTCTTCAATCACTATCGACTAATGATATAACT
TCTTCCTTCTTTGTAGGATAGTCACCATCATTGGATCGTATTGGAAGGAA
ATAAGGATGAGCCATAGCTTCTTGGGCTGTTAAGCGCTCTTGATGATCAT
ATCTGAGCAATCTATTAATTAAATCTAAAGCTTCTTCAGAAACTAGATGT
TGATTTTCTGGAGTAACAAATCTTCCCCATGGCTTTTCTTGCATAAGAGG
TTAAAAGACCTTCAAACTGACTATCCAACTCTATATCATACTTCTCCAAA
TAATCATAAAGTTCATCTGTACCCAGAACCTTAGCTATCTTCACTAACTG
ATCATGATTATCATGTCCATGAAAGA
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