CX078582

Overview
NameCX078582
Unique NameCX078582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4960 contig Csv1_Contig4960:1..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078582 vs. ExPASy Swiss-Prot
Match: SCL13_ARATH (Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.705e-13
Identity = 63/193 (32.64%), Postives = 83/193 (43.01%), Query Frame = 1
Query:   31 EISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVLRSEGPPSLKITAF-ASPSTHDE-LELSFTRENLKHFASEINMPFXXXXXXXXXXXXXXXXXXXRGLE-SEATAVNLPIGTFCNYPATFPSV-------LCFVKQLKPKIVVSLDRGCDRTDVPFPHHMIHALQSYSCLLESLDA 579
            EI P  +FA  T N  +LEA  G  R+HIIDF I  G Q+  L+QEL     GPP L++T    S ST+     LS   E L   A    +PF                    GLE   A  VN P     + P    SV       L  +K L PK+V  +++  +    PF    +  L  Y+ + ES+DA
Sbjct:   54 EICPYWKFAYTTANVEILEAIAGETRVHIIDFQIAQGSQYMFLIQELAKHPGGPPLLRVTGVDDSQSTYARGGGLSLVGERLATLAQSCGVPFEFHDAIMSGCKVQREHL---GLEPGFAVVVNFPY-VLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDA 242          
BLAST of CX078582 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 68/300 (22.67%), Postives = 106/300 (35.33%), Query Frame = 1
Query:    7 ISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVLRSEGPPSLKITAFASPST--HDELELSFTRENLKHFASEINMPFXXXXXXXXXXXXXXXXXXXRGLESEATAVNLPIGTFCNYPATF------PSVLCFVKQLKPKIVVSLDRGCDRTDVPFPHHMIHALQSYSCLLESLDAVNVNLDALQK-IERFLVYPCIEKIVL----GRHHSPERLPPWKSLFMQSGFAPLTFSNFTESQADCLVQRTPVKGFHVEKRQSSLALCWQRKELILATAWR 867
            + AYK F +  P L    FT N+ + E       +HIIDF I YG QW  L+Q L  R  GPP L++T    P +       +  T   LK F  + N+PF                        E T VN  +        T        + L   + + P + V  +         F      AL   S L +  +      D  +  +ER L+      ++      R   PE    W+   +++GF P   S         +V+    K F ++     +   W+ + L   + W+
Sbjct:  282 LKAYKGFVQACPTLIMCYFTANRTINELASKATTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVIN--SGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWK 579          
The following BLAST results are available for this feature:
BLAST of CX078582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SCL13_ARATH7.705e-1332.64Scarecrow-like protein 13 OS=Arabidopsis thaliana ... [more]
SCL30_ARATH4.228e-1122.67Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_9H10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H10-O19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078582 ID=CX078582; Name=CX078582; organism=Citrus sinensis; type=EST; length=880bp
CTCAAGATTAGTGCTTACAAATCTTTCTCCGAAATCTCACCGATTCTTCA
ATTTGCTAATTTCACTTGTAACCAAGCACTTCTTGAAGCCTTTGAAGGGT
GCAATAGAATCCACATTATAGATTTCGATATTGGATATGGTGGGCAGTGG
GCTTCTCTTATGCAGGAGCTTGTTTTGAGAAGTGAAGGTCCTCCTTCGCT
TAAAATCACTGCATTTGCTTCTCCGTCCACACATGATGAGCTCGAGCTCA
GCTTTACTCGAGAAAATTTGAAGCACTTTGCAAGTGAAATCAATATGCCA
TTTGAGCTTGAAATTTTAAGCCTTGAAGCTTTAAATTCTGCTTCTTTGGC
GCTGCCTCTTCGGGGATTAGAAAGTGAGGCAACTGCTGTGAATCTCCCAA
TTGGCACCTTCTGTAATTACCCAGCAACCTTTCCTTCGGTGCTTTGCTTT
GTAAAGCAACTTAAACCCAAGATTGTTGTTTCTTTAGATAGAGGCTGTGA
TCGAACAGATGTTCCATTTCCTCACCATATGATTCACGCACTTCAGTCAT
ACTCCTGCCTACTTGAATCGCTGGATGCTGTGAATGTGAATTTGGATGCC
TTGCAAAAGATTGAGAGGTTTTTGGTTTATCCTTGTATTGAAAAAATTGT
ATTAGGACGCCACCATTCTCCTGAGAGATTGCCTCCTTGGAAGAGTCTGT
TTATGCAATCTGGGTTTGCTCCATTGACATTTAGTAACTTCACTGAGTCC
CAGGCTGACTGTTTGGTGCAACGGACTCCAGTTAAGGGTTTCCATGTTGA
GAAGAGACAGTCCTCGCTCGCTCTCTGCTGGCAGCGGAAAGAGCTTATCT
TGGCTACTGCTTGGAGGTGCTAAGGAGTGG
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