CX078581

Overview
NameCX078581
Unique NameCX078581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4959 contig Csv1_Contig4959:1..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078581 vs. ExPASy Swiss-Prot
Match: RDH8_BOVIN (Retinol dehydrogenase 8 OS=Bos taurus GN=RDH8 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 62/198 (31.31%), Postives = 96/198 (48.48%), Query Frame = 2
Query:  221 GRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDW-----KLYKEFKEAIAERARASQGGKSTDATLFARHVAKKVLSPRPP-KQIAFGHMTGLFAMLSWSP---LWVR 787
            G +D+LVNNAG+   GPL  L L A++  ++ N  G +RLV+ V+P M  RR G IV V+SV+G     +   Y ASK A+    ++L V+L  F I +  V PG V + F    +E +   ++          F++     +R             A+ + K + S RPP ++      T L A+ +  P   L+VR
Sbjct:   83 GEVDVLVNNAGVGLVGPLEGLSLAAMQNVFDTNFFGAVRLVKAVLPSMKRRRQGHIVVVSSVMGLQGVVFNEVYAASKFAMEGFFESLAVQLLQFNIFISLVEPGPVVTEFEGKLLEQVSTAEFPGTDPDTLSYFRDLYLPASRELFHNVGQSPQDVAKVIVKVIGSARPPLRRRTNTRYTPLIALKAMDPSGSLYVR 280          
BLAST of CX078581 vs. ExPASy Swiss-Prot
Match: FOX2_CANTR (Peroxisomal hydratase-dehydrogenase-epimerase OS=Candida tropicalis PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 54/178 (30.34%), Postives = 81/178 (45.51%), Query Frame = 2
Query:    5 KVVLVTGCAKGGIGYEYCKAFAERNCHVFASDIPQRMMDISDFDSDKIEAXXXXXXXXXXXXXAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGA 538
            KVVL+TG A  G+G EY K FA+    V  +D       + +  +   EA              +K ++ K G IDILVNNAGI      A++         +++ +G   L +   PY   ++ G I+N+ S  G        +Y +SKA +L +S T+ +E     I V  V P A
Sbjct:  323 KVVLITG-AGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA 499          
BLAST of CX078581 vs. ExPASy Swiss-Prot
Match: RDH7_RAT (Retinol dehydrogenase 7 OS=Rattus norvegicus GN=Rdh7 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 66/221 (29.86%), Postives = 106/221 (47.96%), Query Frame = 2
Query:    5 KVVLVTGCAKGGIGYEYCKAFAERNCHVFASDIPQRMMD-ISDFDSDKIEAXXXXXXXXXXXXXAVKTIMSKIGRIDI--LVNNAGIA-SAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDWKLY----KEFKEAIAERARAS 643
            K V +TGC   G G    +    R   V A+ + ++  + +    SD++E              A + +  ++G   +  LVNNAGI+   GP   +         ++N LG + +  N++P +   R G +VN+AS +G++     G YC SK  V A SD+LR EL  FG+ V  + PG  ++N    +ME L ++  KL+    +E KE   E+ R S
Sbjct:   30 KYVFITGC-DSGFGNLLARQLDRRGMRVLAACLTEKGAEQLRSKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPMGPNEWMRKKDFASVLDVNLLGVIEVTLNMLPLVRKAR-GRVVNIASTMGRMSL-LGGGYCISKYGVEAFSDSLRRELTYFGVKVAIIEPGGFKTNV--TNMERLSDNLKKLWDQATEEVKEIYGEKFRDS 245          
BLAST of CX078581 vs. ExPASy Swiss-Prot
Match: RDH3_RAT (Retinol dehydrogenase 3 OS=Rattus norvegicus GN=Rdh3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 62/212 (29.25%), Postives = 102/212 (48.11%), Query Frame = 2
Query:    5 KVVLVTGCAKGGIGYEYCKAFAERNCHVFASDIPQRMMD-ISDFDSDKIEAXXXXXXXXXXXXXAVKTIMSKIGRIDI--LVNNAGIA-SAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDWKLYKEFKEAIAE 628
            K V +TGC   G G    +    R   V A+ + ++  + +    SD++E              A + +  ++G   +  LVNNAGI+   GP   +         ++N LG + +  N++P +   R G +VN+AS +G++     G YC SK  V A SD+LR EL  FG+ V  + PG  ++N    +ME L ++  KL+ +  E + E
Sbjct:   30 KYVFITGC-DSGFGNLLARQLDRRGMRVLAACLTEKGAEQLRSKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPVGPNEWMRKKDFASVLDVNLLGVIEVTLNMLPLVRKAR-GRVVNIASTMGRMSLV-GGGYCISKYGVEAFSDSLRRELTYFGVKVAIIEPGGFKTNV--TNMERLSDNLKKLWDQTTEEVKE 236          
BLAST of CX078581 vs. ExPASy Swiss-Prot
Match: FABG_STAES (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fabG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 62/225 (27.56%), Postives = 100/225 (44.44%), Query Frame = 2
Query:    5 KVVLVTGCAKGGIGYEYCKAFAERNCHV---FASDIPQRMMDISDFDSDKIE--AXXXXXXXXXXXXXAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDWKLYKEFKEAIAERARASQGGKSTD 664
            K  LVTG ++G IG       AE   +V   +A    +    + +  +  +E  A              +K ++S+ G +D+LVNNAGI     L  +         + N  G    +Q V P M  +RSG+I+N+ S+VG +  P   +Y A+KA V+ ++ T   EL   GI V  V PG + S+  +            L  + K+ + E+    + G+ TD
Sbjct:    3 KSALVTGASRG-IGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQFGSVDVLVNNAGITKDNLLMRMKEQEWDDVIDTNLKGVFNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTN-----------ALSDDLKDQMLEQIPLKRFGEDTD 215          
BLAST of CX078581 vs. ExPASy Swiss-Prot
Match: FABG_STAEQ (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fabG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 62/225 (27.56%), Postives = 100/225 (44.44%), Query Frame = 2
Query:    5 KVVLVTGCAKGGIGYEYCKAFAERNCHV---FASDIPQRMMDISDFDSDKIE--AXXXXXXXXXXXXXAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDWKLYKEFKEAIAERARASQGGKSTD 664
            K  LVTG ++G IG       AE   +V   +A    +    + +  +  +E  A              +K ++S+ G +D+LVNNAGI     L  +         + N  G    +Q V P M  +RSG+I+N+ S+VG +  P   +Y A+KA V+ ++ T   EL   GI V  V PG + S+  +            L  + K+ + E+    + G+ TD
Sbjct:    3 KSALVTGASRG-IGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQFGSVDVLVNNAGITKDNLLMRMKEQEWDDVIDTNLKGVFNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTN-----------ALSDDLKDQMLEQIPLKRFGEDTD 215          
BLAST of CX078581 vs. ExPASy Swiss-Prot
Match: DHRS7_MOUSE (Dehydrogenase/reductase SDR family member 7 OS=Mus musculus GN=Dhrs7 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.006e-15
Identity = 61/213 (28.64%), Postives = 96/213 (45.07%), Query Frame = 2
Query:    8 VVLVTGCAKGGIGYEYCKAFAERNCHVFASD--------IPQRMMDISDFDSDKIEAXXXXXXXXXXXXXAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPF-GIDVVKVLPGAVRSNFGSNSM-----EGLRNHDWKLYK 604
            VV VTG A  GIG E     ++    +  S         + +R ++  +     I               A K ++ + G+IDILVNN G +    + E  LD  ++   +N +G + L + V+P+M  R+ G IV V S+ G      +  YCASK A+    + L  EL  + GI    V PG V+S+   N+      + +RN+  + YK
Sbjct:   52 VVWVTG-ASSGIGEELAFQLSKLGVSLVLSARRAQELERVKRRCLENGNLKEKDILVLPLDLTDTSSHEAATKAVLQEFGKIDILVNNGGRSQRSLVLETNLDVFKELINLNYIGTVSLTKCVLPHMIERKQGKIVTVNSIAGIASVSLSSGYCASKHALRGFFNALHSELGQYPGITFCNVYPGPVQSDIVKNAFTEEVTKSMRNNIDQSYK 263          
BLAST of CX078581 vs. ExPASy Swiss-Prot
Match: DHRS7_ANOGA (Dehydrogenase/reductase SDR family protein 7-like OS=Anopheles gambiae GN=AGAP005532 PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 7.006e-15
Identity = 67/250 (26.80%), Postives = 107/250 (42.80%), Query Frame = 2
Query:    5 KVVLVTGCAKGGIGYEYCKAFAERNCHVFASDIPQRMMDISDFDSDKIEAXXXXXXXXXXXXXA-----------VKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDWKLYKEFKEAIAERARASQGGKSTDATLFARHVAKKVLSPRPPK 721
            KVVL+TG A  G+G     +F    C V  +   +R  ++     D +E                          V++++   G IDILVNN GI+  G      +D   +   +N  G + L +  +P M +R+ G IV+++SV GK   P   +Y ASK A+ A  D+LR E+    I V  + PG + +    N++ G      K+     +A      + Q   S+     AR     +L+P  P+
Sbjct:   49 KVVLITG-ASSGLGEALAHSFFLAGCKVVLA--ARRKDELERVRKDLLELHATVPTHPPIILPLDLSDLNSIGGKVQSVLEIHGAIDILVNNGGISVRGDALSTAIDVDIRIMLVNYFGSVALTKACLPSMMARKEGRIVSISSVQGKFAIPHRSAYSASKHAMQAFCDSLRAEVAKDNIKVTLISPGYINTALSLNALTGTGASYGKM-----DAATAGGASPQDTASSILKAIARDEKDVMLAPIAPR 290          
BLAST of CX078581 vs. ExPASy Swiss-Prot
Match: Y2049_STAEQ (Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.151e-15
Identity = 53/180 (29.44%), Postives = 89/180 (49.44%), Query Frame = 2
Query:    5 KVVLVTGCAKGGIGYEYCKAFAERNCH-VFASDIPQRMMDISDFDSDKIEAXXXXXXXXXXXXXAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAV 541
            KV +VTG A  GIG    K  +++    V      QR+ +I+   +   +               +K ++   G IDI+VN+AG + +  + +  ++      ++N  G L ++Q  +PY+  + SG I+N+ASV G  PT     Y A+KAA+ A++ +L  EL   G+ V  + PG V
Sbjct:    7 KVAVVTG-ASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKVVSADVTVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMV 185          
BLAST of CX078581 vs. ExPASy Swiss-Prot
Match: Y2036_STAES (Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.151e-15
Identity = 53/180 (29.44%), Postives = 89/180 (49.44%), Query Frame = 2
Query:    5 KVVLVTGCAKGGIGYEYCKAFAERNCH-VFASDIPQRMMDISDFDSDKIEAXXXXXXXXXXXXXAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAV 541
            KV +VTG A  GIG    K  +++    V      QR+ +I+   +   +               +K ++   G IDI+VN+AG + +  + +  ++      ++N  G L ++Q  +PY+  + SG I+N+ASV G  PT     Y A+KAA+ A++ +L  EL   G+ V  + PG V
Sbjct:    7 KVAVVTG-ASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKVVSADVTVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMV 185          
The following BLAST results are available for this feature:
BLAST of CX078581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
RDH8_BOVIN4.108e-1531.31Retinol dehydrogenase 8 OS=Bos taurus GN=RDH8 PE=1... [more]
FOX2_CANTR4.108e-1530.34Peroxisomal hydratase-dehydrogenase-epimerase OS=C... [more]
RDH7_RAT5.365e-1529.86Retinol dehydrogenase 7 OS=Rattus norvegicus GN=Rd... [more]
RDH3_RAT5.365e-1529.25Retinol dehydrogenase 3 OS=Rattus norvegicus GN=Rd... [more]
FABG_STAES5.365e-1527.563-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
FABG_STAEQ5.365e-1527.563-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
DHRS7_MOUSE7.006e-1528.64Dehydrogenase/reductase SDR family member 7 OS=Mus... [more]
DHRS7_ANOGA7.006e-1526.80Dehydrogenase/reductase SDR family protein 7-like ... [more]
Y2049_STAEQ9.151e-1529.44Uncharacterized oxidoreductase SERP2049 OS=Staphyl... [more]
Y2036_STAES9.151e-1529.44Uncharacterized oxidoreductase SE_2036 OS=Staphylo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_9H09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H09-O17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078581 ID=CX078581; Name=CX078581; organism=Citrus sinensis; type=EST; length=797bp
TCCAAAGGTAGTTCTAGTCACTGGCTGTGCCAAAGGTGGCATTGGTTATG
AATACTGCAAGGCATTTGCCGAGCGGAATTGCCACGTCTTTGCCTCTGAC
ATTCCTCAACGTATGATGGACATTTCAGATTTTGATTCAGATAAAATTGA
GGCGCTTGAGCTTGATGTCTCATCAGATGAAAGTGTATCATCAGCAGTGA
AAACAATCATGTCAAAAATTGGCCGTATAGACATTCTGGTCAACAATGCT
GGTATAGCAAGTGCCGGCCCTCTAGCCGAGCTTCCACTAGACGCTATAAG
GAAAGCTTGGGAAATTAACACATTAGGGCAATTAAGGTTGGTGCAAAATG
TTGTTCCATACATGGCTTCAAGGCGCAGTGGGAGCATCGTAAATGTAGCA
AGTGTTGTAGGAAAAGTGCCAACACCGTGGGCAGGGTCTTATTGTGCTAG
CAAGGCTGCAGTGCTTGCCATGTCCGATACTTTGCGCGTTGAATTAAGGC
CTTTTGGTATTGATGTAGTGAAAGTACTCCCTGGTGCTGTAAGATCAAAT
TTTGGCAGTAATAGCATGGAAGGTTTGAGGAATCATGATTGGAAACTCTA
CAAGGAATTCAAAGAGGCTATTGCCGAGCGAGCTAGGGCTTCTCAGGGTG
GTAAATCAACTGATGCTACTTTGTTCGCAAGGCATGTGGCGAAGAAAGTT
TTGAGTCCCAGACCACCAAAGCAAATTGCATTCGGTCACATGACTGGTTT
ATTTGCTATGCTTTCTTGGTCTCCACTTTGGGTGAGAGATTTGTTCT
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