CX078580

Overview
NameCX078580
Unique NameCX078580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: VDLC_HELPY (Probable short-chain type dehydrogenase/reductase vdlC OS=Helicobacter pylori GN=vdlC PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.926e-17
Identity = 61/202 (30.20%), Postives = 103/202 (50.99%), Query Frame = -2
Query:  289 DESVSSAVKTIMSKIGR----IDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSN--SMEGLRNHDWKLYKEFKEAIAERARASQGGKSTDATLFARHVAKKVLSPRPPKQIAFGHMTGLFAML 876
            D S S+A+K + S I       D+L+N+AG    G + + P++ ++K + +N      +VQ  +P + ++    I N++S+ G+V   + G Y ASK A+ A SD LR+EL+PF + V  + PG V+SN+     S+E   + D  LY     A+   A  S         L  + VA+K++     ++I   ++ GL   L
Sbjct:   61 DVSDSNALKEVFSNISAKEKYCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFALCEVVQFCLPLLKNKPHSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPVKSNWEKTAFSVENFESED-SLY-----ALEVNAAKSFYSGVYQNALSPKAVAQKIVFLSMSQKIKARYLIGLKTQL 256          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: VDLC_HELPJ (Probable short-chain type dehydrogenase/reductase vdlC OS=Helicobacter pylori J99 GN=vdlC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.926e-17
Identity = 60/200 (30.00%), Postives = 101/200 (50.50%), Query Frame = -2
Query:  289 DESVSSAVK----TIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDWKLYKEFKEAIAERARASQGGKSTDATLFARHVAKKVLSPRPPKQIAFGHMTGLFAML 876
            D S S+A+K     I +K    D+L+N+AG    G + + P++ ++K + +N      +VQ  +P + ++    I N++S+ G+V   + G Y ASK A+ A SD LR+EL+PF + V  + PG V+SN+   + E     D  +Y     A+   A  S         L A+ VA+K++      +I   ++ GL   L
Sbjct:   50 DVSDSNALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFALCEVVQLCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPVKSNWEKTAFENDERKD-SVY-----ALEVNAAKSFYSGVYQKALNAKEVAQKIVFLSMSHKIKARYLIGLKTQL 243          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: YUSZ_BACSU (Uncharacterized oxidoreductase yusZ OS=Bacillus subtilis GN=yusZ PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.127e-17
Identity = 45/131 (34.35%), Postives = 77/131 (58.78%), Query Frame = -2
Query:  484 DESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSM 876
            ++S+ S  K + S    ID+LVNNAG A  G + ++P++  R+ +E N  G + + + V+PY+       I+NV+S+ G    P    Y +SK A+   S++LR+EL PFGI+   + PG+ +++  S S+
Sbjct:   65 EQSIVSFGKAV-SAYAPIDLLVNNAGTAYGGFIEDVPMEHFRQQFETNVFGVIHVTKTVLPYIRKHGGAKIINVSSISGLTGFPALSPYVSSKHALEGFSESLRIELLPFGIETALIEPGSYKTSIWSTSL 194          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: DRS7C_XENTR (Dehydrogenase/reductase SDR family member 7C OS=Xenopus tropicalis GN=dhrs7c PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.492e-16
Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = -2
Query:  505 KTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRS 852
            K I    G +D+L+NNA +   GPL  + L+  +K  + N  G + LV+ ++P+M SRR+G IV V ++ GK+  P+  +Y ASK A+    D LR E+  F + V  V P  +RS
Sbjct:  111 KEIQDCYGCVDVLINNASMKMKGPLQSVSLELDKKIMDANYFGPITLVKAILPHMISRRTGQIVLVNTIQGKIGVPFRAAYAASKHAIQGFFDCLRAEVEEFDVSVSTVSPTFIRS 226          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: RDH8_BOVIN (Retinol dehydrogenase 8 OS=Bos taurus GN=RDH8 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.545e-16
Identity = 67/213 (31.46%), Postives = 103/213 (48.36%), Query Frame = -2
Query:  265 DESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDW-----KLYKEFKEAIAERARASQGGKSTDATLFARHVAKKVLSPRPP-KQIAFGHMTGLFAMLSWSP---LWVR 876
            DESV+  +  I    G +D+LVNNAG+   GPL  L L A++  ++ N  G +RLV+ V+P M  RR G IV V+SV+G     +   Y ASK A+    ++L V+L  F I +  V PG V + F    +E +   ++          F++     +R             A+ + K + S RPP ++      T L A+ +  P   L+VR
Sbjct:   70 DESVAQCLNCIQG--GEVDVLVNNAGVGLVGPLEGLSLAAMQNVFDTNFFGAVRLVKAVLPSMKRRRQGHIVVVSSVMGLQGVVFNEVYAASKFAMEGFFESLAVQLLQFNIFISLVEPGPVVTEFEGKLLEQVSTAEFPGTDPDTLSYFRDLYLPASRELFHNVGQSPQDVAKVIVKVIGSARPPLRRRTNTRYTPLIALKAMDPSGSLYVR 280          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: FABG_THEMA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Thermotoga maritima GN=fabG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.324e-16
Identity = 49/123 (39.84%), Postives = 67/123 (54.47%), Query Frame = -2
Query:  505 ESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRS 873
            + +   V+ ++ K GRID+LVNNAGI     L  +  +       +N  G   + Q VVPYM  +R+GSIVNV+SVVG    P   +Y ASKA V+ M+ T   EL    I V  V PG + +
Sbjct:   67 DQIKEVVEKVVQKYGRIDVLVNNAGITRDALLVRMKEEDWDAVINVNLKGVFNVTQMVVPYMIKQRNGSIVNVSSVVGIYGNPGQTNYAASKAGVIGMTKTWAKELAGRNIRVNAVAPGFIET 189          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: YAEB_SCHPO (Uncharacterized oxidoreductase C23D3.11 OS=Schizosaccharomyces pombe GN=SPAC23D3.11 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 43/116 (37.07%), Postives = 68/116 (58.62%), Query Frame = -2
Query:  484 GRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSM 831
            G +  L+NNAG   + P  +L ++ + K  ++N  G +R+      +   R  G+IVNV S+V  VP  +  +Y ASKAA+LA S+TLR+EL PFG+ V  ++ G V++   S  +
Sbjct:   76 GSLHYLINNAGAPCSAPAIDLDIEDVSKVMDVNFYGVIRM-NKAFQHQLIRAKGTIVNVNSLVSYVPFAFNAAYNASKAALLAYSNTLRIELAPFGVQVTSIMTGGVQTKIQSKPL 190          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: RDH8_HUMAN (Retinol dehydrogenase 8 OS=Homo sapiens GN=RDH8 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.649e-15
Identity = 65/213 (30.52%), Postives = 100/213 (46.95%), Query Frame = -2
Query:  265 DESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSN-----SMEGLRNHDWKLYKEFKEAIAERARASQGGKSTDATLFARHVAKKVLSPRPP----KQIAFGHMTGLFAMLSWSPLWVR 876
            DESV+  +  I    G +D+LVNNAG+   GPL  L L A++  ++ N  G +RLV+ V+P M  RR G IV ++SV+G     +   Y ASK A+    ++L ++L  F I +  V PG V + F        SM      D +    F++     +R        +     + +   + S RPP      I +  +T L  + S   L+VR
Sbjct:   70 DESVAQCLSCIQ---GEVDVLVNNAGMGLVGPLEGLSLAAMQNVFDTNFFGAVRLVKAVLPGMKRRRQGHIVVISSVMGLQGVIFNDVYAASKFALEGFFESLAIQLLQFNIFISLVEPGPVVTEFEGKLLAQVSMAEFPGTDPETLHYFRDLYLPASRKLFCSVGQNPQDVVQAIVNVISSTRPPLRRQTNIRYSPLTTLKTVDSSGSLYVR 279          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: AYR1_YEAST (NADPH-dependent 1-acyldihydroxyacetone phosphate reductase OS=Saccharomyces cerevisiae GN=AYR1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.675e-15
Identity = 50/202 (24.75%), Postives = 97/202 (48.02%), Query Frame = -2
Query:  229 GRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDWKLYKEFKEAIAERARASQGGKSTDATLFARHVAKKVLSPRPPKQIAFGHMTGLFA-MLSWSPLWVRDLFFSTRFSLNK 831
            G++D+L NNAG +   P  +    A+ + +++N  G + + + +  ++   + G+IV   S+ G V  P+   Y ASKAA+   +  L +E++PF + V+  + G V ++        L       + E +EA   R   ++  K   A  +A+ + K +LS   P  +  G    +   ++ + P W+ +   S +F L+K
Sbjct:   85 GKLDLLYNNAGQSCTFPALDATDAAVEQCFKVNVFGHINMCRELSEFLIKAK-GTIVFTGSLAGVVSFPFGSIYSASKAAIHQYARGLHLEMKPFNVRVINAITGGVATDIADK--RPLPETSIYNFPEGREAFNSRKTMAKDNKPMPADAYAKQLVKDILSTSDPVDVYRGTFANIMRFVMIFVPYWLLEKGLSKKFKLDK 283          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: FABG_STAES (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fabG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15
Identity = 49/162 (30.25%), Postives = 79/162 (48.77%), Query Frame = -2
Query:  388 ESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDWKLYKEFKEAIAERARASQGGKSTD 873
            + V   +K ++S+ G +D+LVNNAGI     L  +         + N  G    +Q V P M  +RSG+I+N+ S+VG +  P   +Y A+KA V+ ++ T   EL   GI V  V PG + S+  +            L  + K+ + E+    + G+ TD
Sbjct:   65 DEVKEMIKEVVSQFGSVDVLVNNAGITKDNLLMRMKEQEWDDVIDTNLKGVFNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTN-----------ALSDDLKDQMLEQIPLKRFGEDTD 215          
The following BLAST results are available for this feature:
BLAST of CX078580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
VDLC_HELPY3.926e-1730.20Probable short-chain type dehydrogenase/reductase ... [more]
VDLC_HELPJ3.926e-1730.00Probable short-chain type dehydrogenase/reductase ... [more]
YUSZ_BACSU5.127e-1734.35Uncharacterized oxidoreductase yusZ OS=Bacillus su... [more]
DRS7C_XENTR1.492e-1637.93Dehydrogenase/reductase SDR family member 7C OS=Xe... [more]
RDH8_BOVIN2.545e-1631.46Retinol dehydrogenase 8 OS=Bos taurus GN=RDH8 PE=1... [more]
FABG_THEMA3.324e-1639.843-oxoacyl-[acyl-carrier-protein] reductase OS=Ther... [more]
YAEB_SCHPO1.263e-1537.07Uncharacterized oxidoreductase C23D3.11 OS=Schizos... [more]
RDH8_HUMAN1.649e-1530.52Retinol dehydrogenase 8 OS=Homo sapiens GN=RDH8 PE... [more]
AYR1_YEAST3.675e-1524.75NADPH-dependent 1-acyldihydroxyacetone phosphate r... [more]
FABG_STAES6.268e-1530.253-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_9H09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H09-O17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078580 ID=CX078580; Name=CX078580; organism=Citrus sinensis; type=EST; length=877bp
CAAAGTAATTTTATAAAAATTTAATAAAAACTCTTATTGACAACTAAACA
ACTAAATTTTTTTATGTAAAAGCTCTATCATCAAAAGATTTACTTAAATA
AGCTCTATTTAAAGCTGTACCAAATAGAGCCTAAATCTAATGGCGTCAAA
TTTATGAAGTACATGTGAACATTCTTCTAATTATTTATAAAATAGTAAAT
GGCAAACAGCCCCAAATCTTTAGACCTCCTTGTTTAGACTAAAACGAGTC
GAAAAGAACAAATCTCTCACCCAAAGTGGAGACCAAGAAAGCATAGCAAA
TAAACCAGTCATGTGACCGAATGCAATTTGCTTTGGTGGTCTGGGACTCA
AAACTTTCTTCGCCACATGCCTTGCGAACAAAGTAGCATCAGTTGATTTA
CCACCCTGAGAAGCCCTAGCTCGCTCGGCAATAGCCTCTTTGAATTCCTT
GTAGAGTTTCCAATCATGATTCCTCAAACCTTCCATGCTATTACTGCCAA
AATTTGATCTTACAGCACCAGGGAGTACTTTCACTACATCAATACCAAAA
GGCCTTAATTCAACGCGCAAAGTATCGGACATGGCAAGCACTGCAGCCTT
GCTAGCACAATAAGACCCTGCCCACGGTGTTGGCACTTTTCCTACAACAC
TTGCTACATTTACGATGCTCCCACTGCGCCTTGAAGCCATGTATGGAACA
ACATTTTGCACCAACCTTAATTGCCCTAATGTGTTAATTTCCCAAGCTTT
CCTTATAGCGTCTAGTGGAAGCTCGGCTAGAGGGCCGGCACTTGCTATAC
CAGCATTGTTGACCAGAATGTCTATACGGCCAATTTTTGACATGATTGTT
TTCACTGCTGATGATACACTTTCATCT
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