CX078580

Overview
NameCX078580
Unique NameCX078580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: Y0419_STAS1 (Uncharacterized oxidoreductase SSP0419 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0419 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.051e-14
Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = -2
Query:  472 ESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLR 873
            E V+  V+    K G+IDILVN+AG+  +  + E  ++A     ++N  G L  +  V+P M ++ SG I+N+AS+ G   T  +  Y ASKAAV +++  L  EL   G+ V  + PG V +    ++  G R
Sbjct:   69 EEVTELVEKTKEKFGQIDILVNSAGLMLSSAITEGDVEAWEAMIDVNIKGTLYTINAVLPSMLNQSSGHIINIASISGFEVTKKSTLYSASKAAVHSITQGLEKELAKTGVRVTSISPGMVDTPLSGDTDWGAR 202          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: FABG1_SYNY3 (3-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Synechocystis sp. (strain PCC 6803) GN=fabG1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.051e-14
Identity = 42/128 (32.81%), Postives = 66/128 (51.56%), Query Frame = -2
Query:  490 ESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSN 873
            + V   +KT + K  RID+LVNNAGI     L  + L+  +   ++N  G     + V   M  ++SG I+N+ SV G +  P   +Y A+KA V+  + T+  EL   G+ V  V PG + ++   N
Sbjct:   69 DEVDQLIKTTLDKFSRIDVLVNNAGITRDTLLLRMKLEDWQAVIDLNLTGVFLCTKAVSKLMLKQKSGRIINITSVAGMMGNPGQANYSAAKAGVIGFTKTVAKELASRGVTVNAVAPGFIATDMTEN 196          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: YBBO_ECOLI (Uncharacterized oxidoreductase ybbO OS=Escherichia coli (strain K12) GN=ybbO PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.182e-13
Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = -2
Query:  490 LVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSN 816
            + NNAG    GPL+ +    + + +  N  G  +L   ++P M     G IV  +SV+G + TP  G+Y ASK A+ A SD LR+ELR  GI V  + PG +R+ F  N
Sbjct:   91 IFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDN 199          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: YBBO_ECOL6 (Uncharacterized oxidoreductase ybbO OS=Escherichia coli O6 GN=ybbO PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.182e-13
Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = -2
Query:  490 LVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSN 816
            + NNAG    GPL+ +    + + +  N  G  +L   ++P M     G IV  +SV+G + TP  G+Y ASK A+ A SD LR+ELR  GI V  + PG +R+ F  N
Sbjct:   91 IFNNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDN 199          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: Y1627_STAS1 (Uncharacterized oxidoreductase SSP1627 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1627 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.182e-13
Identity = 48/145 (33.10%), Postives = 81/145 (55.86%), Query Frame = -2
Query:  448 ESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVL--PGAVRSNFGSN-SMEGLRNHDWKLYK 873
            + V++ ++T  +  GRID+L+NNAG+     L +   D   +  ++N  G L  +  V+PYM  ++SG I+N+ASV G V  P +  YC +K AV A+++ LR E    G ++   +  PGAV +    + S + ++    +LYK
Sbjct:   66 DEVNALIETAYNDFGRIDVLINNAGLMPQSFLEKNKQDEWNQMIDVNIKGVLYGIGAVLPYMRKQKSGHIINLASVAGHVVFPGSAVYCGTKYAVRAITEGLRQEEAIVGSNIRTTILSPGAVSTELTDHISDKDMKQDIDELYK 210          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: DS7CA_DANRE (Dehydrogenase/reductase SDR family member 7C-A OS=Danio rerio GN=dhrs7ca PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.182e-13
Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = -2
Query:  535 ESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDV 873
            E++S  V  I    G +D+L+ N+ +    P+  L L+  +   ++N  G + L + V+P M +RR+G  V V S+ GK+  P+   Y ASK AV A  D LR E+  FGI V
Sbjct:  104 ENISDVVSEICECYGCVDVLICNSSMKVKAPVQNLSLEMDKTIMDVNYFGPITLAKGVLPLMITRRTGQFVLVNSIQGKLALPFRTCYAASKHAVQAFFDCLRAEVEEFGISV 216          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: UCPA_ECOLI (Oxidoreductase ucpA OS=Escherichia coli (strain K12) GN=ucpA PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.544e-13
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = -2
Query:  505 SVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVG-KVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRS 870
            SV++A+K    K GRIDILVNNAG+   G   ++  D      +IN  G   + + V+P M +R+ G IV ++SV G  V  P   +Y  +KAA++ ++ +L VE    GI V  + PG VR+
Sbjct:   68 SVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRT 190          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: UCPA_ECO57 (Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN=ucpA PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.544e-13
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = -2
Query:  505 SVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVG-KVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRS 870
            SV++A+K    K GRIDILVNNAG+   G   ++  D      +IN  G   + + V+P M +R+ G IV ++SV G  V  P   +Y  +KAA++ ++ +L VE    GI V  + PG VR+
Sbjct:   68 SVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRT 190          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: RIDH_KLEAE (Ribitol 2-dehydrogenase OS=Klebsiella aerogenes GN=rbtD PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.544e-13
Identity = 43/121 (35.54%), Postives = 66/121 (54.55%), Query Frame = -2
Query:  511 ESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAV 873
            + V + ++ I+   GR+DI   NAG    GP+AE   D   +   +N     R V++V+P++ +++SG I+  A + G VP  W   Y ASK AV A   T R ++  +G+ V  VLPG V
Sbjct:   73 DQVDNLLQGILQLTGRLDIFHANAGAYIGGPVAEGDPDVWDRVLHLNINAAFRCVRSVLPHLIAQKSGDIIFTAVIAGVVPVIWEPVYTASKFAVQAFVHTTRRQVAQYGVRVGAVLPGPV 193          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: DHB1_MOUSE (Estradiol 17-beta-dehydrogenase 1 OS=Mus musculus GN=Hsd17b1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.544e-13
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = -2
Query:  499 GRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNF 831
            GR+D+LV NAG    GPL    L+A+    ++N LG +R++Q  +P M  R SG ++  ASV G +  P+   YCASK A+  + ++L + L  FG+ V  +  GAV + F
Sbjct:   83 GRVDVLVCNAGRGLFGPLEAHELNAVGAVLDVNVLGTIRMLQAFLPDMKRRHSGRVLVTASVGGLMGLPFHEVYCASKFALEGLCESLAILLPLFGVHVSLIECGAVHTAF 193          
The following BLAST results are available for this feature:
BLAST of CX078580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
Y0419_STAS19.051e-1434.33Uncharacterized oxidoreductase SSP0419 OS=Staphylo... [more]
FABG1_SYNY39.051e-1432.813-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Sy... [more]
YBBO_ECOLI1.182e-1338.53Uncharacterized oxidoreductase ybbO OS=Escherichia... [more]
YBBO_ECOL61.182e-1338.53Uncharacterized oxidoreductase ybbO OS=Escherichia... [more]
Y1627_STAS11.182e-1333.10Uncharacterized oxidoreductase SSP1627 OS=Staphylo... [more]
DS7CA_DANRE1.182e-1336.28Dehydrogenase/reductase SDR family member 7C-A OS=... [more]
UCPA_ECOLI1.544e-1338.21Oxidoreductase ucpA OS=Escherichia coli (strain K1... [more]
UCPA_ECO571.544e-1338.21Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN... [more]
RIDH_KLEAE1.544e-1335.54Ribitol 2-dehydrogenase OS=Klebsiella aerogenes GN... [more]
DHB1_MOUSE1.544e-1338.74Estradiol 17-beta-dehydrogenase 1 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_9H09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H09-O17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078580 ID=CX078580; Name=CX078580; organism=Citrus sinensis; type=EST; length=877bp
CAAAGTAATTTTATAAAAATTTAATAAAAACTCTTATTGACAACTAAACA
ACTAAATTTTTTTATGTAAAAGCTCTATCATCAAAAGATTTACTTAAATA
AGCTCTATTTAAAGCTGTACCAAATAGAGCCTAAATCTAATGGCGTCAAA
TTTATGAAGTACATGTGAACATTCTTCTAATTATTTATAAAATAGTAAAT
GGCAAACAGCCCCAAATCTTTAGACCTCCTTGTTTAGACTAAAACGAGTC
GAAAAGAACAAATCTCTCACCCAAAGTGGAGACCAAGAAAGCATAGCAAA
TAAACCAGTCATGTGACCGAATGCAATTTGCTTTGGTGGTCTGGGACTCA
AAACTTTCTTCGCCACATGCCTTGCGAACAAAGTAGCATCAGTTGATTTA
CCACCCTGAGAAGCCCTAGCTCGCTCGGCAATAGCCTCTTTGAATTCCTT
GTAGAGTTTCCAATCATGATTCCTCAAACCTTCCATGCTATTACTGCCAA
AATTTGATCTTACAGCACCAGGGAGTACTTTCACTACATCAATACCAAAA
GGCCTTAATTCAACGCGCAAAGTATCGGACATGGCAAGCACTGCAGCCTT
GCTAGCACAATAAGACCCTGCCCACGGTGTTGGCACTTTTCCTACAACAC
TTGCTACATTTACGATGCTCCCACTGCGCCTTGAAGCCATGTATGGAACA
ACATTTTGCACCAACCTTAATTGCCCTAATGTGTTAATTTCCCAAGCTTT
CCTTATAGCGTCTAGTGGAAGCTCGGCTAGAGGGCCGGCACTTGCTATAC
CAGCATTGTTGACCAGAATGTCTATACGGCCAATTTTTGACATGATTGTT
TTCACTGCTGATGATACACTTTCATCT
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