CX078580

Overview
NameCX078580
Unique NameCX078580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: DHSO_RHOSH (Sorbitol dehydrogenase OS=Rhodobacter sphaeroides GN=polS PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13
Identity = 43/121 (35.54%), Postives = 68/121 (56.20%), Query Frame = -2
Query:  511 SVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYM-ASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAV 870
            S+   V  ++ + G IDILVNNA +    P+ E+  ++  + + IN  G L ++Q V   M A  R G I+N+AS  G+      G YCA+KAAV++++ +  + L   GI+V  + PG V
Sbjct:   65 SIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVV 185          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: BDH_HUMAN (D-beta-hydroxybutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=BDH1 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = -2
Query:  388 LVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPG---AVRSNFGSNSMEGLRNHDWKLYKEFKEAIAERARASQGGKSTD 816
            LVNNAGI++ G +    L+  ++  E+N  G +R+ ++ +P +  R  G +VN++S++G++  P    YC +K  V A SD LR E+ P G+ V  V PG   A  S +   S++ +    W       E + E  R   G K  D
Sbjct:  141 LVNNAGISTFGEVEFTSLETYKQVAEVNLWGTVRMTKSFLP-LIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNFIAATSLYSPESIQAIAKKMW-------EELPEVVRKDYGKKYFD 278          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: BDH_MOUSE (D-beta-hydroxybutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Bdh1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.633e-13
Identity = 59/196 (30.10%), Postives = 93/196 (47.45%), Query Frame = -2
Query:  337 ESVSSAVKTIMSKIGRIDI----LVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPG---AVRSNFGSNSMEGLRNHDW--------KLY--KEFKEAIAERARASQGGKSTDATLFARHVAKKVLSPRP 873
            E V  AV+TI S +   +     LVNNAGI++ G +    ++  ++  E+N  G +R  ++ +P +  R  G +VN++S++G++  P    YC +K  V A SD LR E+ P G+ V  V PG   A  S +    ++ +    W        K Y  K F E IA+       G STD +     V   + +  P
Sbjct:  118 EEVEKAVETIRSGLKDPEKGMWGLVNNAGISTFGEVEFTSMETYKEVAEVNLWGTVRTTKSFLPLLR-RAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIAATSLYSPERIQAIAKKMWDDLPEVVRKDYGRKYFDEKIAKMETYCNSG-STDTSSVINAVTHALTAATP 311          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: BDH_RAT (D-beta-hydroxybutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Bdh1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.439e-13
Identity = 47/152 (30.92%), Postives = 80/152 (52.63%), Query Frame = -2
Query:  430 ESVSSAVKTIMSKIGRIDI----LVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDWKLYKEFKEAI 873
            E V  AV+T+ S +   +     LVNNAGI++ G +    ++  ++  E+N  G +R  ++ +P +  R  G +VN++S++G++  P    YC +K  V A SD LR E+ P G+ V  V PG   +     S E ++    K++ E  E +
Sbjct:  118 EEVEKAVETVRSGLKDPEKGMWGLVNNAGISTFGEVEFTSMETYKEVAEVNLWGTVRTTKSFLPLLR-RAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIAATSLYSPERIQAIAKKMWDELPEVV 268          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: YQ53_SCHPO (Uncharacterized oxidoreductase C162.03 OS=Schizosaccharomyces pombe GN=SPCC162.03 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.492e-13
Identity = 52/196 (26.53%), Postives = 90/196 (45.92%), Query Frame = -2
Query:  313 ESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMA-SRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRP-FGIDVVKVLPGAVRSNFGSNSMEGLRNH-------DWKLYKEFKEAIAERARASQGGKSTDATLFARHVAKKVLSPRPPKQIAFGH 873
            +SV +A K    + G +DI++NNAG    G      ++ + +   +N  G   + +  +  M  S + G I+ ++SV G  P+P    Y ASK AV  +S T+  EL P + I +  V PG +++ + S++M+  + H        W+ + E             G + TD    A  +       RPP+++  GH
Sbjct:   60 KSVETAFKDAKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQMNVNFWGVAYITKEALNLMRESGKGGRILQISSVAGYYPSPCLSMYNASKFAVEGLSQTIMRELDPNWNIAITIVQPGGMQTEWASSNMQWAKPHPAYENDRSWRPFWE----------NYHGCEETDPNKAAELLYSIAKLDRPPQKLVLGH 245          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: Y2049_STAEQ (Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.492e-13
Identity = 39/120 (32.50%), Postives = 68/120 (56.67%), Query Frame = -2
Query:  511 SVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAV 870
            ++   +K ++   G IDI+VN+AG + +  + +  ++      ++N  G L ++Q  +PY+  + SG I+N+ASV G  PT     Y A+KAA+ A++ +L  EL   G+ V  + PG V
Sbjct:   66 NIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMV 185          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: Y2036_STAES (Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.492e-13
Identity = 39/120 (32.50%), Postives = 68/120 (56.67%), Query Frame = -2
Query:  511 SVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAV 870
            ++   +K ++   G IDI+VN+AG + +  + +  ++      ++N  G L ++Q  +PY+  + SG I+N+ASV G  PT     Y A+KAA+ A++ +L  EL   G+ V  + PG V
Sbjct:   66 NIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMV 185          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: RDH7_RAT (Retinol dehydrogenase 7 OS=Rattus norvegicus GN=Rdh7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.492e-13
Identity = 55/162 (33.95%), Postives = 87/162 (53.70%), Query Frame = -2
Query:  409 ESVSSAVKTIMSKIGRIDI--LVNNAGIA-SAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDWKLY----KEFKEAIAERARAS 873
            ES+ +A + +  ++G   +  LVNNAGI+   GP   +         ++N LG + +  N++P +   R G +VN+AS +G++     G YC SK  V A SD+LR EL  FG+ V  + PG  ++N    +ME L ++  KL+    +E KE   E+ R S
Sbjct:   88 ESIVAATQWVKERVGNRGLWGLVNNAGISVPMGPNEWMRKKDFASVLDVNLLGVIEVTLNMLPLVRKAR-GRVVNIASTMGRMSL-LGGGYCISKYGVEAFSDSLRRELTYFGVKVAIIEPGGFKTNV--TNMERLSDNLKKLWDQATEEVKEIYGEKFRDS 245          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: RDH3_RAT (Retinol dehydrogenase 3 OS=Rattus norvegicus GN=Rdh3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.492e-13
Identity = 51/153 (33.33%), Postives = 83/153 (54.25%), Query Frame = -2
Query:  424 ESVSSAVKTIMSKIGRIDI--LVNNAGIA-SAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDWKLYKEFKEAIAE 873
            ES+ +A + +  ++G   +  LVNNAGI+   GP   +         ++N LG + +  N++P +   R G +VN+AS +G++     G YC SK  V A SD+LR EL  FG+ V  + PG  ++N    +ME L ++  KL+ +  E + E
Sbjct:   88 ESIVAATQWVKERVGNRGLWGLVNNAGISVPVGPNEWMRKKDFASVLDVNLLGVIEVTLNMLPLVRKAR-GRVVNIASTMGRMSLV-GGGYCISKYGVEAFSDSLRRELTYFGVKVAIIEPGGFKTNV--TNMERLSDNLKKLWDQTTEEVKE 236          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: YXJF_BACSU (Uncharacterized oxidoreductase yxjF OS=Bacillus subtilis GN=yxjF PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.662e-13
Identity = 42/134 (31.34%), Postives = 67/134 (50.00%), Query Frame = -2
Query:  475 DESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGL 876
            +  V+  V  I  + GR+DILVNNAGI    P+ E P D   +  ++        +++V P M  ++ G I+N+ASV G V      +Y ++K  V+ ++    +E  P GI V  + PG V +    N +  L
Sbjct:   64 EAQVADTVNVIQKQYGRLDILVNNAGIQHVAPIEEFPTDTFEQLIKVMLTAPFIAMKHVFPIMKKQQFGRIINIASVNGLVGFAGKSAYNSAKHGVIGLTKVGALEGAPHGITVNALCPGYVDTQLVRNQLSDL 197          
The following BLAST results are available for this feature:
BLAST of CX078580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
DHSO_RHOSH2.016e-1335.54Sorbitol dehydrogenase OS=Rhodobacter sphaeroides ... [more]
BDH_HUMAN2.016e-1332.19D-beta-hydroxybutyrate dehydrogenase, mitochondria... [more]
BDH_MOUSE2.633e-1330.10D-beta-hydroxybutyrate dehydrogenase, mitochondria... [more]
BDH_RAT3.439e-1330.92D-beta-hydroxybutyrate dehydrogenase, mitochondria... [more]
YQ53_SCHPO4.492e-1326.53Uncharacterized oxidoreductase C162.03 OS=Schizosa... [more]
Y2049_STAEQ4.492e-1332.50Uncharacterized oxidoreductase SERP2049 OS=Staphyl... [more]
Y2036_STAES4.492e-1332.50Uncharacterized oxidoreductase SE_2036 OS=Staphylo... [more]
RDH7_RAT4.492e-1333.95Retinol dehydrogenase 7 OS=Rattus norvegicus GN=Rd... [more]
RDH3_RAT4.492e-1333.33Retinol dehydrogenase 3 OS=Rattus norvegicus GN=Rd... [more]
YXJF_BACSU7.662e-1331.34Uncharacterized oxidoreductase yxjF OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_9H09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H09-O17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078580 ID=CX078580; Name=CX078580; organism=Citrus sinensis; type=EST; length=877bp
CAAAGTAATTTTATAAAAATTTAATAAAAACTCTTATTGACAACTAAACA
ACTAAATTTTTTTATGTAAAAGCTCTATCATCAAAAGATTTACTTAAATA
AGCTCTATTTAAAGCTGTACCAAATAGAGCCTAAATCTAATGGCGTCAAA
TTTATGAAGTACATGTGAACATTCTTCTAATTATTTATAAAATAGTAAAT
GGCAAACAGCCCCAAATCTTTAGACCTCCTTGTTTAGACTAAAACGAGTC
GAAAAGAACAAATCTCTCACCCAAAGTGGAGACCAAGAAAGCATAGCAAA
TAAACCAGTCATGTGACCGAATGCAATTTGCTTTGGTGGTCTGGGACTCA
AAACTTTCTTCGCCACATGCCTTGCGAACAAAGTAGCATCAGTTGATTTA
CCACCCTGAGAAGCCCTAGCTCGCTCGGCAATAGCCTCTTTGAATTCCTT
GTAGAGTTTCCAATCATGATTCCTCAAACCTTCCATGCTATTACTGCCAA
AATTTGATCTTACAGCACCAGGGAGTACTTTCACTACATCAATACCAAAA
GGCCTTAATTCAACGCGCAAAGTATCGGACATGGCAAGCACTGCAGCCTT
GCTAGCACAATAAGACCCTGCCCACGGTGTTGGCACTTTTCCTACAACAC
TTGCTACATTTACGATGCTCCCACTGCGCCTTGAAGCCATGTATGGAACA
ACATTTTGCACCAACCTTAATTGCCCTAATGTGTTAATTTCCCAAGCTTT
CCTTATAGCGTCTAGTGGAAGCTCGGCTAGAGGGCCGGCACTTGCTATAC
CAGCATTGTTGACCAGAATGTCTATACGGCCAATTTTTGACATGATTGTT
TTCACTGCTGATGATACACTTTCATCT
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