CX078580

Overview
NameCX078580
Unique NameCX078580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: FABG_CUPLA (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata GN=CLKR27 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.662e-13
Identity = 43/128 (33.59%), Postives = 65/128 (50.78%), Query Frame = -2
Query:  493 DESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGS 876
            +E V + +KT +   G +DILVNNAGI   G L  +     ++  ++N  G     Q     M  ++ G I+N+ASVVG V      +Y A+KA V+  + T+  E     I+V  V PG + S+  S
Sbjct:  139 EEDVEAMIKTAVDAWGTVDILVNNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNAGQANYSAAKAGVIGFTKTVAREYASRNINVNAVAPGFISSDMTS 266          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.001e-12
Identity = 44/147 (29.93%), Postives = 74/147 (50.34%), Query Frame = -2
Query:  436 DESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDWKLYKEFKE 876
            + +  +A+++ + K G +D+L+NNAGI    P+ E+ L    K   +N  G   + ++ + YM     G+I+N  SV G V  P   +Y ASK  VL ++ ++ V+     I V  V PG + +     S   L N++  L +  KE
Sbjct:   64 EPACQNAIRSAVDKFGGLDVLINNAGIEIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEKSF--LENNEGTLEEIKKE 208          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: HCDR_XANP2 (2-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecD PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.307e-12
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = -2
Query:  505 VSSAVKTIMSKIGRIDILVNNAGI---ASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRS 867
            V++A+   M + G ID+LVNNAGI   + AG L   P++   K   +N  G     + V+P+M  + +G IVN+ASV   V  P   +Y  SK AVL ++ ++ V+    GI    V PG + +
Sbjct:   67 VNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIET 190          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: DHGA_BACME (Glucose 1-dehydrogenase A OS=Bacillus megaterium GN=gdhA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.307e-12
Identity = 51/178 (28.65%), Postives = 84/178 (47.19%), Query Frame = -2
Query:  373 DESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRR-SGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSN---------SMEGLRNHDWKLYKEFKEAIAERARASQGGKSTDATLFA 876
            +E V + V+T + + G +D+++NNAG+ +  P  EL LD   K  + N  G     +  + Y       G+++N++SV   +P P    Y ASK  +  M++TL +E  P GI V  + PGA+ +   +           +E +    +    E   A+A    +SQ    T  TLFA
Sbjct:   69 EEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPEQRADVESMIPMGYIGKPEEVAAVAAFLASSQASYVTGITLFA 246          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: DHG4_BACME (Glucose 1-dehydrogenase 4 OS=Bacillus megaterium GN=gdhIV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.307e-12
Identity = 51/178 (28.65%), Postives = 84/178 (47.19%), Query Frame = -2
Query:  373 DESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRR-SGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSN---------SMEGLRNHDWKLYKEFKEAIAERARASQGGKSTDATLFA 876
            +E V + V+T + + G +D+++NNAG+ +  P  EL LD   K  + N  G     +  + Y       G+++N++SV   +P P    Y ASK  +  M++TL +E  P GI V  + PGA+ +   +           +E +    +    E   A+A    +SQ    T  TLFA
Sbjct:   69 EEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPVQRADVESMIPMGYIGKPEEVAAVAAFLASSQASYVTGITLFA 246          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: DHG3_BACME (Glucose 1-dehydrogenase 3 OS=Bacillus megaterium GN=gdhIII PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.307e-12
Identity = 51/178 (28.65%), Postives = 84/178 (47.19%), Query Frame = -2
Query:  373 DESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRR-SGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSN---------SMEGLRNHDWKLYKEFKEAIAERARASQGGKSTDATLFA 876
            +E V + V+T + + G +D+++NNAG+ +  P  EL LD   K  + N  G     +  + Y       G+++N++SV   +P P    Y ASK  +  M++TL +E  P GI V  + PGA+ +   +           +E +    +    E   A+A    +SQ    T  TLFA
Sbjct:   69 EEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKQMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPVQRADVESMIPMGYIGKPEEVAAVAAFLASSQASYVTGITLFA 246          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: CPNA_COMTE (Cyclopentanol dehydrogenase OS=Comamonas testosteroni GN=cpnA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.307e-12
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = -2
Query:  511 SSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAV 864
            + AV TI+++  R+D LVNNAGI +  P+ +   +   + +EIN        + V+  M     G IVNV+S+ G V  P A +Y ASK AV   +    V+L PF I V  V PG +
Sbjct:   71 TGAVDTILAESDRLDALVNNAGILTLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVI 188          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: CPNA_COMS9 (Cyclopentanol dehydrogenase OS=Comamonas sp. (strain NCIMB 9872) GN=cpnA PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.307e-12
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = -2
Query:  511 SSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAV 864
            + AV TI+++  R+D LVNNAGI +  P+ +   +   + +EIN        + V+  M     G IVNV+S+ G V  P A +Y ASK AV   +    V+L PF I V  V PG +
Sbjct:   71 TGAVDTILAESDRLDALVNNAGILTLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVI 188          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: DHB11_PONAB (Estradiol 17-beta-dehydrogenase 11 OS=Pongo abelii GN=HSD17B11 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.707e-12
Identity = 47/136 (34.56%), Postives = 63/136 (46.32%), Query Frame = -2
Query:  475 ESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVK---VLPGAVRSNFGSNSMEGL 873
            E + SA K + ++IG + ILVNNAG+     L       I K +E+N L      +  +P M     G IV VAS  G V  P+  +YC+SK A +    TL  EL    I  VK   + P  V + F  N    L
Sbjct:   98 EDIYSAAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMMKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPSTSL 233          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: FABG_RICTY (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia typhi GN=fabG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.229e-12
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = -2
Query:  421 IMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDWKLYKEFKEAIAER 846
            ++SKI  +DILV NAGI S      +      K  +IN      L +  +  M  +R G I+N++S+VG    P   +YCASKA ++ M+ +L  E+   GI V  V PG ++S+              KL ++ +EAI ++
Sbjct:   70 LISKISNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTD-----------KLNEKQREAIVQK 200          
The following BLAST results are available for this feature:
BLAST of CX078580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
FABG_CUPLA7.662e-1333.593-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
BACC2_BACSU1.001e-1229.93Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
HCDR_XANP21.307e-1235.482-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]
DHGA_BACME1.307e-1228.65Glucose 1-dehydrogenase A OS=Bacillus megaterium G... [more]
DHG4_BACME1.307e-1228.65Glucose 1-dehydrogenase 4 OS=Bacillus megaterium G... [more]
DHG3_BACME1.307e-1228.65Glucose 1-dehydrogenase 3 OS=Bacillus megaterium G... [more]
CPNA_COMTE1.307e-1237.29Cyclopentanol dehydrogenase OS=Comamonas testoster... [more]
CPNA_COMS91.307e-1237.29Cyclopentanol dehydrogenase OS=Comamonas sp. (stra... [more]
DHB11_PONAB1.707e-1234.56Estradiol 17-beta-dehydrogenase 11 OS=Pongo abelii... [more]
FABG_RICTY2.229e-1232.393-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_9H09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H09-O17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078580 ID=CX078580; Name=CX078580; organism=Citrus sinensis; type=EST; length=877bp
CAAAGTAATTTTATAAAAATTTAATAAAAACTCTTATTGACAACTAAACA
ACTAAATTTTTTTATGTAAAAGCTCTATCATCAAAAGATTTACTTAAATA
AGCTCTATTTAAAGCTGTACCAAATAGAGCCTAAATCTAATGGCGTCAAA
TTTATGAAGTACATGTGAACATTCTTCTAATTATTTATAAAATAGTAAAT
GGCAAACAGCCCCAAATCTTTAGACCTCCTTGTTTAGACTAAAACGAGTC
GAAAAGAACAAATCTCTCACCCAAAGTGGAGACCAAGAAAGCATAGCAAA
TAAACCAGTCATGTGACCGAATGCAATTTGCTTTGGTGGTCTGGGACTCA
AAACTTTCTTCGCCACATGCCTTGCGAACAAAGTAGCATCAGTTGATTTA
CCACCCTGAGAAGCCCTAGCTCGCTCGGCAATAGCCTCTTTGAATTCCTT
GTAGAGTTTCCAATCATGATTCCTCAAACCTTCCATGCTATTACTGCCAA
AATTTGATCTTACAGCACCAGGGAGTACTTTCACTACATCAATACCAAAA
GGCCTTAATTCAACGCGCAAAGTATCGGACATGGCAAGCACTGCAGCCTT
GCTAGCACAATAAGACCCTGCCCACGGTGTTGGCACTTTTCCTACAACAC
TTGCTACATTTACGATGCTCCCACTGCGCCTTGAAGCCATGTATGGAACA
ACATTTTGCACCAACCTTAATTGCCCTAATGTGTTAATTTCCCAAGCTTT
CCTTATAGCGTCTAGTGGAAGCTCGGCTAGAGGGCCGGCACTTGCTATAC
CAGCATTGTTGACCAGAATGTCTATACGGCCAATTTTTGACATGATTGTT
TTCACTGCTGATGATACACTTTCATCT
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