CX078580

Overview
NameCX078580
Unique NameCX078580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: DS7CB_DANRE (Dehydrogenase/reductase SDR family member 7C-B OS=Danio rerio GN=dhrs7cb PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.912e-12
Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = -2
Query:  535 ESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDV 873
            ESV   +  I+     +D+LV N+ +    P+  L L   R   ++N  G + LV+  +P + SRRSG I+ V S+ GK+  P+  +Y ASK AV A  + LR E++ +GI V
Sbjct:  112 ESVPEVISEILECFCCLDVLVFNSSMKLKAPVHSLSLQMDRLLMDVNYFGPITLVKGFLPSLISRRSGHILLVNSIQGKLAMPFRTTYAASKHAVQAFFECLRAEVQEYGITV 224          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: DHB11_HUMAN (Estradiol 17-beta-dehydrogenase 11 OS=Homo sapiens GN=HSD17B11 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.912e-12
Identity = 46/136 (33.82%), Postives = 63/136 (46.32%), Query Frame = -2
Query:  475 ESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVK---VLPGAVRSNFGSNSMEGL 873
            E + S+ K + ++IG + ILVNNAG+     L       I K +E+N L      +  +P M     G IV VAS  G V  P+  +YC+SK A +    TL  EL    I  VK   + P  V + F  N    L
Sbjct:   98 EDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPSTSL 233          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.803e-12
Identity = 44/117 (37.61%), Postives = 60/117 (51.28%), Query Frame = -2
Query:  505 VKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRS 855
            VK  +   GR+DILVNNAGI   G + E   +   K   +N  G   L +  V  M  +  G IVNV+S  G +  P    Y  SKAA+L ++ +L V+   +GI V  V PG  +S
Sbjct:   71 VKKTVETFGRLDILVNNAGIVPYGNIEETSEEDFDKTMAVNVKGPFLLSKYAVEQMKKQGGGVIVNVSSEAGLIGIPRRCVYSVSKAALLGLTRSLAVDYVDYGIRVNAVCPGTTQS 187          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: RDH2_RAT (Retinol dehydrogenase 2 OS=Rattus norvegicus GN=Rdh2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.803e-12
Identity = 47/127 (37.01%), Postives = 70/127 (55.12%), Query Frame = -2
Query:  502 ESVSSAVKTIMSKIGRIDI--LVNNAGIAS-AGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSN 873
            ES+ +A + +  ++G   +  LVNNAGI+   GP   +    I    ++N LG + +  + VP +   R G +VNVAS+ G++     G YC SK  V A SD+LR EL  FG+ V  V PG  R++
Sbjct:   88 ESIVAATQWVKERVGNTGLWGLVNNAGISGHLGPNEWMNKQNIASVLDVNLLGMIEVTLSTVPLVRKAR-GRVVNVASIAGRLSF-CGGGYCISKYGVEAFSDSLRRELSYFGVKVAIVEPGFFRTD 212          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: FABG_RICCN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia conorii GN=fabG PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.803e-12
Identity = 47/155 (30.32%), Postives = 75/155 (48.39%), Query Frame = -2
Query:  388 KTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRSNFGSNSMEGLRNHDWKLYKEFKEAIAERARASQGGKSTD 852
            + ++SK  ++DILV NAGI S      +  +   K  +IN      L +  +  M   R G I+N++S+VG    P   +YCASKA ++ M+ +L  E+   GI V  V PG ++S+              KL ++ +EAI ++      G   D
Sbjct:   68 RNLISKASKLDILVCNAGITSDTLAIRMKDEDFDKVIDINLKANFILNREAIKKMIQNRYGRIINISSIVGISGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNTVAPGFIKSDMTD-----------KLNEKQREAIVQKIPLGTYGMPED 211          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: BDH_CHICK (D-beta-hydroxybutyrate dehydrogenase, mitochondrial OS=Gallus gallus GN=BDH1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.803e-12
Identity = 53/173 (30.64%), Postives = 86/173 (49.71%), Query Frame = -2
Query:  337 LVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPG---AVRSNFGSNSMEGLRNHDW--------KLY--KEFKEAIAERARASQGGKSTDATLFARHVAKKVLSPRP 816
            LVNNAGI++ G +    +D   +  E+N  G +R  +  +P +  R  G +VN++S++G++ +P    YC +K  V A SD LR E++P G+ V  V PG   AV + +    ++ + +  W        K Y  K F E +++       G STD +     VA  + S  P
Sbjct:  137 LVNNAGISTFGEVEFTSMDTYMEVAEVNLWGTVRTTKAFLP-LIRRSKGRVVNISSMMGRMGSPARSPYCITKFGVEAFSDCLRYEMQPQGVMVSIVEPGNFIAVTNLYSPERIKAIADKMWDELPEIVRKDYGRKYFDEQVSKMETYCNSG-STDTSPVIESVAHALTSTAP 307          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: DHG_BACSU (Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gdh PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.966e-12
Identity = 40/125 (32.00%), Postives = 66/125 (52.80%), Query Frame = -2
Query:  505 DESVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRR-SGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRS 876
            +E V + V+T + + G +DI++NNAG+ +  P  E+PL    K    N  G     +  + Y       G+++N++SV   +P P    Y ASK  +  M++TL +E  P GI V  + PGA+ +
Sbjct:   69 EEDVKNIVQTAIKEFGTLDIMINNAGLENPVPSHEMPLKDWDKVIGTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEVIPWPLFVHYAASKGGIKLMTETLALEYAPKGIRVNNIGPGAINT 193          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: UCPA_SALTY (Oxidoreductase ucpA OS=Salmonella typhimurium GN=ucpA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.486e-12
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = -2
Query:  505 SVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGK-VPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRS 870
            SV +AV       GRIDILVNNAG+   G   ++  +      +IN  G   + + V+P M  R+ G IV ++SV G  V  P   +Y  SKAA++ ++ +L VE    GI V  + PG VR+
Sbjct:   68 SVQAAVARAKETEGRIDILVNNAGVCRLGNFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRT 190          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: UCPA_SALTI (Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.486e-12
Identity = 46/123 (37.40%), Postives = 66/123 (53.66%), Query Frame = -2
Query:  505 SVSSAVKTIMSKIGRIDILVNNAGIASAGPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGK-VPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRS 870
            SV +AV       GRIDILVNNAG+   G   ++  +      +IN  G   + + V+P M  R+ G IV ++SV G  V  P   +Y  SKAA++ ++ +L VE    GI V  + PG VR+
Sbjct:   68 SVQAAVARAKETEGRIDILVNNAGVCRLGNFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRT 190          
BLAST of CX078580 vs. ExPASy Swiss-Prot
Match: RDH1_BOVIN (11-cis retinol dehydrogenase OS=Bos taurus GN=RDH5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.486e-12
Identity = 43/126 (34.13%), Postives = 71/126 (56.35%), Query Frame = -2
Query:  505 ESVSSAVKTIMSKIGRIDI--LVNNAGIASA-GPLAELPLDAIRKAWEINTLGQLRLVQNVVPYMASRRSGSIVNVASVVGKVPTPWAGSYCASKAAVLAMSDTLRVELRPFGIDVVKVLPGAVRS 873
            +S+  AVK + + +G   +  LVNNAG+A   GP      +  ++   +NTLG + +   ++P +   R G ++N+ SV+G++     G YC SK  + A SD+LR ++ PFG+ V  V PG  R+
Sbjct:   87 QSIRQAVKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQRVLNVNTLGPIGVTLALLPLLLQAR-GRVINITSVLGRLAAN-GGGYCVSKFGLEAFSDSLRRDVAPFGVRVSIVEPGFFRT 210          
The following BLAST results are available for this feature:
BLAST of CX078580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
DS7CB_DANRE2.912e-1236.28Dehydrogenase/reductase SDR family member 7C-B OS=... [more]
DHB11_HUMAN2.912e-1233.82Estradiol 17-beta-dehydrogenase 11 OS=Homo sapiens... [more]
Y325_THEMA3.803e-1237.61Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
RDH2_RAT3.803e-1237.01Retinol dehydrogenase 2 OS=Rattus norvegicus GN=Rd... [more]
FABG_RICCN3.803e-1230.323-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
BDH_CHICK3.803e-1230.64D-beta-hydroxybutyrate dehydrogenase, mitochondria... [more]
DHG_BACSU4.966e-1232.00Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gd... [more]
UCPA_SALTY6.486e-1237.40Oxidoreductase ucpA OS=Salmonella typhimurium GN=u... [more]
UCPA_SALTI6.486e-1237.40Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE... [more]
RDH1_BOVIN6.486e-1234.1311-cis retinol dehydrogenase OS=Bos taurus GN=RDH5... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_9H09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H09-O17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078580 ID=CX078580; Name=CX078580; organism=Citrus sinensis; type=EST; length=877bp
CAAAGTAATTTTATAAAAATTTAATAAAAACTCTTATTGACAACTAAACA
ACTAAATTTTTTTATGTAAAAGCTCTATCATCAAAAGATTTACTTAAATA
AGCTCTATTTAAAGCTGTACCAAATAGAGCCTAAATCTAATGGCGTCAAA
TTTATGAAGTACATGTGAACATTCTTCTAATTATTTATAAAATAGTAAAT
GGCAAACAGCCCCAAATCTTTAGACCTCCTTGTTTAGACTAAAACGAGTC
GAAAAGAACAAATCTCTCACCCAAAGTGGAGACCAAGAAAGCATAGCAAA
TAAACCAGTCATGTGACCGAATGCAATTTGCTTTGGTGGTCTGGGACTCA
AAACTTTCTTCGCCACATGCCTTGCGAACAAAGTAGCATCAGTTGATTTA
CCACCCTGAGAAGCCCTAGCTCGCTCGGCAATAGCCTCTTTGAATTCCTT
GTAGAGTTTCCAATCATGATTCCTCAAACCTTCCATGCTATTACTGCCAA
AATTTGATCTTACAGCACCAGGGAGTACTTTCACTACATCAATACCAAAA
GGCCTTAATTCAACGCGCAAAGTATCGGACATGGCAAGCACTGCAGCCTT
GCTAGCACAATAAGACCCTGCCCACGGTGTTGGCACTTTTCCTACAACAC
TTGCTACATTTACGATGCTCCCACTGCGCCTTGAAGCCATGTATGGAACA
ACATTTTGCACCAACCTTAATTGCCCTAATGTGTTAATTTCCCAAGCTTT
CCTTATAGCGTCTAGTGGAAGCTCGGCTAGAGGGCCGGCACTTGCTATAC
CAGCATTGTTGACCAGAATGTCTATACGGCCAATTTTTGACATGATTGTT
TTCACTGCTGATGATACACTTTCATCT
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