CX078574

Overview
NameCX078574
Unique NameCX078574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3393 contig Csv1_Contig3393:705..1283. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX078574 vs. ExPASy Swiss-Prot
Match: PUCJ_BACSU (Uric acid permease pucJ OS=Bacillus subtilis GN=pucJ PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.256e-14
Identity = 40/119 (33.61%), Postives = 68/119 (57.14%), Query Frame = 2 
Query:  221 IDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGIGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGK 577
            +  AP+ ++P PF +GAP+F+ G    M++   V +VESTG F+A+ +     P+    L +G   +GI IL+ GLF      + + +NAGLL LT+V +R +V  +   ++   ++ K
Sbjct:  213 VTEAPFFQIPKPFYFGAPAFEIGPILTMLIVGIVIIVESTGVFYAIGKIC-GRPLTDKDLVKGYRAEGIAILIGGLFNAFPYNTFA-QNAGLLQLTKVKTRNIVVTAGCILVCLGLIPK 329
[Close]
BLAST of CX078574 vs. ExPASy Swiss-Prot
Match: S23A3_HUMAN (Solute carrier family 23 member 3 OS=Homo sapiens GN=SLC23A3 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 41/151 (27.15%), Postives = 66/151 (43.71%), Query Frame = 2 
Query:   86 IFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGIGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQI 538
            +F   +V+  V  VWI +  +       + +  T+A             PWI +P P +W  P        A +  +  A   S G +    R     P PP   SRG+  +G+G +L+GL G+  GT+ S  N G + L + GS++V  +
Sbjct:  261 VFRLLSVLIPVACVWIVSAFVGFSVIPQELSAPTKA-------------PWIWLPHPGEWNWPLLTPRALAAGISMALAASTSSLGCYALCGRLLHLPPPPPHACSRGLSLEGLGSVLAGLLGSPMGTASSFPNVGKVGLIQAGSQQVAHL 398
The following BLAST results are available for this feature:
BLAST of CX078574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PUCJ_BACSU7.256e-1433.61Uric acid permease pucJ OS=Bacillus subtilis GN=pu... [more]
S23A3_HUMAN4.402e-1127.15Solute carrier family 23 member 3 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_9H05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H05-O9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078574 ID=CX078574; Name=CX078574; organism=Citrus sinensis; type=EST; length=579bp
CTTTGTTATATTTATCCCTGAAGATTACTAATTGTTACTGCTTGTCTGGC
AGTATCTGCCTCATGTGATAAAACGTGGGAAAAATATCTTTGATCGTTTT
GCTGTCATATTTTCTGTGGTGATTGTGTGGATATATGCTCATCTACTTAC
TGTGGGTGGGGCTTATAATGATGCTGCCCCTAAGACACAAGCAAGCTGCC
GAACTGATCGTGCTGGTCTCATTGATGCTGCTCCCTGGATAAGAGTTCCG
TGGCCCTTCCAATGGGGGGCGCCTTCATTTGATGCTGGTGAAGCTTTTGC
CATGATGATGGCCTCCTTTGTTGCTCTTGTTGAGTCAACTGGTGCTTTTT
TTGCGGTAGCACGGTATGCAAGTGCAACTCCAATGCCACCTTCTGTTCTC
AGCCGTGGTGTGGGTTGGCAGGGAATTGGCATTTTGCTTTCTGGGTTATT
TGGAACTGTAAACGGAACATCGGTGTCTGTAGAGAATGCTGGTCTTTTGG
CCTTGACTAGAGTTGGCAGTCGAAGGGTTGTCCAAATATCTGCTGGATTC
ATGATATTCTTCTCTGTTCTTGGGAAATT
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