CX078572

Overview
NameCX078572
Unique NameCX078572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_THEAC (Peptidyl-tRNA hydrolase OS=Thermoplasma acidophilum GN=pth PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.693e-17
Identity = 45/114 (39.47%), Postives = 69/114 (60.53%), Query Frame = 3
Query:  273 KLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            K+V+ VR+DL MG GKIA+Q AHAA       M+ +R +  +W   GQ KIVV   +  E+ ++  +A++ G+   +V D G TQV  G+ T + +GP  +  +D +TGK +LL
Sbjct:    4 KMVIAVRKDLDMGKGKIAAQVAHAAVTCAIRSMKINRDVFNEWYDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQDRGYTQVEPGTITCIGLGPDEEEKLDKITGKYKLL 117          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_PYRAE (Peptidyl-tRNA hydrolase OS=Pyrobaculum aerophilum GN=pth PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.693e-17
Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  267 DLKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSD--RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 611
            D+K+ + +R DLK+  GK A+Q  HAA       M     R  L +W + GQ KIV+T  +   + +L E A++ GLPT VV DAG T++  G+ T + +GP P  LVD VTG  +L
Sbjct:    2 DVKMTIAIRGDLKISCGKAAAQAGHAAVECVLAAMGDAKWRKWLDQWLEEGQKKIVLTADDAAHLYQLHERAKSLGLPTAVVIDAGLTELPPGTPTAICVGPAPDELVDKVTGSLKL 118          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_STAMF (Peptidyl-tRNA hydrolase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=pth PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.436e-17
Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 3
Query:  267 DLKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            + K V++VR D+KM  GK+A Q AHAA     E  +  R    +W   GQ KIVV   +++++ K  E+A+   LP  ++ DAG T++   + T + IGPGP   +D +TG  +LL
Sbjct:    6 EYKQVIIVRTDIKMSKGKLAVQVAHAAVSAAFEAYKKKREWFLEWWATGQKKIVVKGGSERDLLKYAEMAKKKDLPVAIIRDAGLTELPPNTLTAVGIGPGPSRKIDEITGDLKLL 121          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_ARCFU (Peptidyl-tRNA hydrolase OS=Archaeoglobus fulgidus GN=pth PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.436e-17
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 3
Query:  270 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            LK V+VVR DLK+  GK+A Q AHAA   Y   ++SD  L RKW   GQ K+V+  K+ +E+  +   AE+ GL T +V DAG T+V  G+ T + IGP  +  +D VTG   LL
Sbjct:    3 LKQVIVVRDDLKLSRGKLAVQVAHAAIIGY---LKSDSSLRRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLL 114          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_THEVO (Peptidyl-tRNA hydrolase OS=Thermoplasma volcanium GN=pth PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.711e-17
Identity = 46/115 (40.00%), Postives = 69/115 (60.00%), Query Frame = 3
Query:  270 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            +KLV+ VR+DL MG GKIA+Q AHAA     + M+  + +  +W   GQ KIVV   N  E+  + + A++ G+   V+ D G TQV  G+ T + +GP  +  +D +TGK +LL
Sbjct:    3 VKLVVAVRKDLDMGKGKIAAQVAHAAVSCAIKAMKEKKKIFDEWMDEGQKKIVVKVPNVDEIYIIKKKADSMGIINEVIQDRGYTQVEPGTVTCIGLGPDYEVYLDDITGKYKLL 117          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_AERPE (Peptidyl-tRNA hydrolase OS=Aeropyrum pernix GN=pth PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.163e-16
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  273 KLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQC----GQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 611
            K  +VVR+DL MG GK A+Q AHA+      +++S R   R+W +     GQ K+V+  ++  E+ +++  A   GLP   V DAG+TQ+  G+ T  A+GP P  LVD +TG  +L
Sbjct:    7 KQAIVVRRDLGMGRGKAAAQAAHASCEAVFLILESGRPEWRRWLEMWRLQGQAKVVLRVESLAELQEVYSKAVEEGLPASFVRDAGKTQLEPGTPTAAAVGPAPSRLVDRITGGLKL 123          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_METJA (Peptidyl-tRNA hydrolase OS=Methanocaldococcus jannaschii GN=pth PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.826e-16
Identity = 40/115 (34.78%), Postives = 69/115 (60.00%), Query Frame = 3
Query:  270 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            +K+V+V+R DL MG GK+ +Q  HA    + +  + +   + +W + GQ K+VV   +++E+  ++  A + GLP  ++ DAG TQ+  G+ T +AIGP     +D +TG  +LL
Sbjct:    1 MKMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEKELIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAIGPEKDEKIDKITGHLKLL 115          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_METAC (Peptidyl-tRNA hydrolase OS=Methanosarcina acetivorans GN=pth PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.690e-16
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 3
Query:  267 DLKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            + K  +V R DLK+  GK A Q AHAA        +SD   L KW++ GQ KIV+     +++ +L E A   GLPT ++ DAG T++ AG+ TVL IGP  + ++D VT   +L+
Sbjct:    3 EYKQCIVTRDDLKLSKGKFAVQVAHAALSAAEWASKSD---LEKWKEGGQKKIVLRVPTIKDLYELKEKARREGLPTALIQDAGLTEIPAGTVTVLGIGPAKEEVIDKVTRDLKLV 115          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_METBU (Peptidyl-tRNA hydrolase OS=Methanococcoides burtonii (strain DSM 6242) GN=pth PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.820e-16
Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = 3
Query:  267 DLKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            + K  +++R DLK+  GK+A Q AHAA        +SD   L  W++ GQ K+V+  +  Q++ +L E A   GL T ++ DAG T+++ G+ TVL IGP     +D VTG  +L+
Sbjct:    3 EYKQCIIIRDDLKLSKGKLAVQVAHAAVSAAEWASRSD---LENWKEGGQKKVVLRVEKLQDLFELKEKARREGLSTALITDAGLTEIAPGTVTVLGIGPARADYIDKVTGNLKLV 115          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_METBF (Peptidyl-tRNA hydrolase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=pth PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.295e-16
Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = 3
Query:  267 DLKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            + K  +V R+DLK+  GK A Q AHAA        ++D   L KW++ GQ KIV+      ++ +L E A   GLPT ++ DAG T++  G+ TVL IGP  + L+D VT   +L+
Sbjct:    3 EYKQCIVTREDLKLSKGKFAVQVAHAAISASEWASKND---LEKWKEGGQKKIVLKVPTLNDLYELKEKARREGLPTALIQDAGLTEIPPGTVTVLGIGPAKEELIDKVTRNLKLV 115          
The following BLAST results are available for this feature:
BLAST of CX078572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PTH_THEAC5.693e-1739.47Peptidyl-tRNA hydrolase OS=Thermoplasma acidophilu... [more]
PTH_PYRAE5.693e-1741.03Peptidyl-tRNA hydrolase OS=Pyrobaculum aerophilum ... [more]
PTH_STAMF7.436e-1737.93Peptidyl-tRNA hydrolase OS=Staphylothermus marinus... [more]
PTH_ARCFU7.436e-1745.22Peptidyl-tRNA hydrolase OS=Archaeoglobus fulgidus ... [more]
PTH_THEVO9.711e-1740.00Peptidyl-tRNA hydrolase OS=Thermoplasma volcanium ... [more]
PTH_AERPE2.163e-1639.32Peptidyl-tRNA hydrolase OS=Aeropyrum pernix GN=pth... [more]
PTH_METJA2.826e-1634.78Peptidyl-tRNA hydrolase OS=Methanocaldococcus jann... [more]
PTH_METAC3.690e-1640.52Peptidyl-tRNA hydrolase OS=Methanosarcina acetivor... [more]
PTH_METBU4.820e-1637.93Peptidyl-tRNA hydrolase OS=Methanococcoides burton... [more]
PTH_METBF6.295e-1639.66Peptidyl-tRNA hydrolase OS=Methanosarcina barkeri ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_9H04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H04-O7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078572 ID=CX078572; Name=CX078572; organism=Citrus sinensis; type=EST; length=796bp
AGTAATCTGTTCATAATCTGTTAACGACGATGTGGGCTTCCCAGCAAAAC
TCTTCTCAGCTTTCTAACAAGAAGCAGCAGAAGCAGGAAAAAGTATCGTT
AGCAGTGAGTTTTAGGCCAGAGAATTTCATCCCAGGCCTTGTAATTGGTT
TCATTTTTGGGATGTTATTAGATTTATCAAAGCCAGGTAAGAATTATGTG
AAAAAGAAAAATTTCTTACCGAGGAAACCACAAGAACAAGTTTCTGTCTC
AAGTGACGGTGACCAAGACCTCAAATTGGTTTTGGTGGTTAGGCAAGACC
TGAAGATGGGGAGTGGAAAGATTGCATCACAATGTGCCCATGCAGCCACT
GGGATGTATGCAGAACTAATGCAAAGTGACCGGCACCTTCTGAGAAAATG
GGAGCAATGTGGGCAGCCCAAGATAGTTGTTACGTGCAAGAATCAACAAG
AAATGAATAAGCTGTGGGAAGTAGCCGAAAACACAGGCCTTCCAACTTTT
GTTGTTGCGGATGCTGGACGGACACAGGTTTCAGCTGGGTCGAAGACGGT
TCTTGCCATCGGACCTGGACCCAAATCTTTGGTGGATTCTGTGACAGGGA
AACAGCGCCTGCTCTAGTTATGCTTAAGAATGGAGGACTTTTTGCTTAAA
ATTTCCCAGACGACAATGTTAAAAGATCAAGATTACCAACAAAATCTTCT
TGACTCTTGGTTTCATTTGCCAGGCAGCTGTCATATTCTGGTGGAAAAGG
CTTCTTTCCCTTGAGTTGGCCAGTACTCAAGGCAGGTGCAAGCAGT
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