CX078572

Overview
NameCX078572
Unique NameCX078572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2202 contig Csv1_Contig2202:17..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_METMA (Peptidyl-tRNA hydrolase OS=Methanosarcina mazei GN=pth PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = 3
Query:  267 DLKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            + K  +V R DLK+  GK A Q AHAA        + D   L KW++ GQ KIV+   + +E+ +L E A   GLPT ++ DAG T++  G+ TVL IGP  + L+D +T   +L+
Sbjct:    3 EYKQCIVTRDDLKLSKGKFAVQVAHAALSAAEWASKGD---LEKWKEGGQKKIVLKVPSIKELYELKEKARREGLPTALIQDAGLTEIPPGTVTVLGIGPAKEELIDKITKDLKLV 115          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_HALLT (Peptidyl-tRNA hydrolase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=pth PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.074e-15
Identity = 41/110 (37.27%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  270 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTG 599
            +K  +V R D+ MG GK+A+Q AHA+   Y +   + R + +KW+  GQ K+V+   ++ ++ +L + A+  G+P  ++ DAG TQ+  G+ T LA+GP     VD VTG
Sbjct:    1 MKQAIVARTDIGMGEGKLAAQVAHASLSAYQD---AGRRVRKKWQGEGQKKVVLKGDSESQLFELADKADKEGIPYAIIRDAGHTQLEPGTVTALAVGPARDDTVDRVTG 107          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_META3 (Peptidyl-tRNA hydrolase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=pth PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 36/114 (31.58%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  273 KLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            K V+++R DLKMG GK+ +Q +HA+   +    +++  + ++W   GQ K+V+   +++E+ +++  A   G    ++ DAG TQ+ +G+ T + IGP  +  ++ +TGK +LL
Sbjct:    3 KQVIILRNDLKMGKGKLVAQGSHASLISFLNTQKNNPSVAKEWLNEGQKKVVLKVNSEKELFEVFRDANIDGFSCCLIRDAGHTQIPSGTATAVGIGPDKEEKLEKITGKLKLL 116          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_HALWD (Peptidyl-tRNA hydrolase OS=Haloquadratum walsbyi (strain DSM 16790) GN=pth PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 42/114 (36.84%), Postives = 66/114 (57.89%), Query Frame = 3
Query:  270 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 611
            +K  +V R DL+MG GK+A+Q AHA+     +         ++W+  GQ KIV+   +++++ +L + AE  G+P  VV DAG TQ+  G+ T +AIGP     +D +TG   L
Sbjct:    1 MKQAIVARADLRMGKGKLAAQVAHASLSAVEDTGTRSE---KQWKGGGQKKIVLKANSEKKLFQLADEAERDGIPHAVVRDAGHTQLEPGTVTCIAIGPDSDENIDRITGSLSL 111          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_METM7 (Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pth PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.454e-14
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  282 LVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            +V+R DLKMG GK+A+Q  HA+   +    +     +  W   GQ K+V+   +++E+ ++++     GLP  ++ DAGRTQV  GS T + IGP  +  +  VT   +LL
Sbjct:    6 IVIRNDLKMGKGKMAAQACHASIQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEKELLEIFKNVNIEGLPCSLIRDAGRTQVEPGSLTAVGIGPEKEEKISKVTKDLKLL 116          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_METVS (Peptidyl-tRNA hydrolase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pth PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14
Identity = 38/111 (34.23%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  282 LVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            +V+R DLKMG GK+A+Q  HA+   Y    +     +  W   GQ K+V+   +++E+ +++      GLP  ++ DAG+TQ+  GS T + IGP  +  +  VT   +LL
Sbjct:    6 IVIRNDLKMGKGKMAAQACHASIQAYLHAQKISPSAVMYWMNEGQKKVVLKVNSEKELLEIFRDVNIDGLPCSLIRDAGKTQIEPGSLTAVGIGPEKEDKISKVTKNLKLL 116          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_METM6 (Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pth PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14
Identity = 38/111 (34.23%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  282 LVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            +V+R DLKMG GK+A+Q  HA+   +    +     +  W   GQ K+V+   +++E+ ++++     GLP  ++ DAGRTQ+  GS T + IGP  +  +  VT   +LL
Sbjct:    6 IVIRNDLKMGKGKMAAQACHASLQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEKELLEIFKNVNIEGLPCSLIRDAGRTQIEPGSLTAVGIGPEKEEKISKVTKDLKLL 116          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_METM5 (Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pth PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14
Identity = 38/111 (34.23%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  282 LVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            +V+R DLKMG GK+A+Q  HA+   +    +     +  W   GQ K+V+   +++E+ ++++     GLP  ++ DAGRTQ+  GS T + IGP  +  +  VT   +LL
Sbjct:    6 IVIRNDLKMGKGKMAAQACHASIQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEKELLEIFKNVNIEGLPCSLIRDAGRTQIEPGSLTAVGIGPEKEEKISKVTKDLKLL 116          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: PTH_METMP (Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis GN=pth PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 37/111 (33.33%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  282 LVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 614
            +V+R DLKMG GK+A+Q  HA+   +    +     +  W   GQ K+V+   +++E+ ++++     GLP  ++ DAGRTQ+  GS T + IGP  +  +  V    +LL
Sbjct:    6 IVIRNDLKMGKGKMAAQACHASIQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEKELLEIFKNVNIEGLPCSLIRDAGRTQIEPGSLTAVGIGPEKEEKISKVKKDLKLL 116          
BLAST of CX078572 vs. ExPASy Swiss-Prot
Match: V029_FOWPV (Putative peptidyl-tRNA hydrolase OS=Fowlpox virus GN=FPV029 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.406e-12
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 3
Query:  270 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVT 596
            LK+V V+R DLKM  G+I SQC H A   Y +  +     L++W + GQ K  V   N+ EM  + E A   G+  ++V +  R + +    TVL IGP P  + +S+T
Sbjct:   14 LKMVFVIRDDLKMTKGEIVSQCCHGAISAYEKSKKYSPDYLKRWLKNGQVKETVKVDNENEMMDIRENATAIGVNYYIVQNDKRQKCN----TVLVIGPAPNYMFESLT 118          
The following BLAST results are available for this feature:
BLAST of CX078572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PTH_METMA8.221e-1639.66Peptidyl-tRNA hydrolase OS=Methanosarcina mazei GN... [more]
PTH_HALLT1.074e-1537.27Peptidyl-tRNA hydrolase OS=Halorubrum lacusprofund... [more]
PTH_META32.025e-1431.58Peptidyl-tRNA hydrolase OS=Methanococcus aeolicus ... [more]
PTH_HALWD2.025e-1436.84Peptidyl-tRNA hydrolase OS=Haloquadratum walsbyi (... [more]
PTH_METM73.454e-1435.14Peptidyl-tRNA hydrolase OS=Methanococcus maripalud... [more]
PTH_METVS4.511e-1434.23Peptidyl-tRNA hydrolase OS=Methanococcus vannielii... [more]
PTH_METM64.511e-1434.23Peptidyl-tRNA hydrolase OS=Methanococcus maripalud... [more]
PTH_METM54.511e-1434.23Peptidyl-tRNA hydrolase OS=Methanococcus maripalud... [more]
PTH_METMP2.239e-1333.33Peptidyl-tRNA hydrolase OS=Methanococcus maripalud... [more]
V029_FOWPV9.406e-1236.70Putative peptidyl-tRNA hydrolase OS=Fowlpox virus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_9H04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H04-O7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078572 ID=CX078572; Name=CX078572; organism=Citrus sinensis; type=EST; length=796bp
AGTAATCTGTTCATAATCTGTTAACGACGATGTGGGCTTCCCAGCAAAAC
TCTTCTCAGCTTTCTAACAAGAAGCAGCAGAAGCAGGAAAAAGTATCGTT
AGCAGTGAGTTTTAGGCCAGAGAATTTCATCCCAGGCCTTGTAATTGGTT
TCATTTTTGGGATGTTATTAGATTTATCAAAGCCAGGTAAGAATTATGTG
AAAAAGAAAAATTTCTTACCGAGGAAACCACAAGAACAAGTTTCTGTCTC
AAGTGACGGTGACCAAGACCTCAAATTGGTTTTGGTGGTTAGGCAAGACC
TGAAGATGGGGAGTGGAAAGATTGCATCACAATGTGCCCATGCAGCCACT
GGGATGTATGCAGAACTAATGCAAAGTGACCGGCACCTTCTGAGAAAATG
GGAGCAATGTGGGCAGCCCAAGATAGTTGTTACGTGCAAGAATCAACAAG
AAATGAATAAGCTGTGGGAAGTAGCCGAAAACACAGGCCTTCCAACTTTT
GTTGTTGCGGATGCTGGACGGACACAGGTTTCAGCTGGGTCGAAGACGGT
TCTTGCCATCGGACCTGGACCCAAATCTTTGGTGGATTCTGTGACAGGGA
AACAGCGCCTGCTCTAGTTATGCTTAAGAATGGAGGACTTTTTGCTTAAA
ATTTCCCAGACGACAATGTTAAAAGATCAAGATTACCAACAAAATCTTCT
TGACTCTTGGTTTCATTTGCCAGGCAGCTGTCATATTCTGGTGGAAAAGG
CTTCTTTCCCTTGAGTTGGCCAGTACTCAAGGCAGGTGCAAGCAGT
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