CX078571

Overview
NameCX078571
Unique NameCX078571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_SULIY (Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pth PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.945e-20
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -3
Query:  384 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 728
            +K+V+VVR D+KMG GK+A+Q AHAA  +   ++ S+    +  L +W Q GQPKIVV   +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++L+D +TG  +LL
Sbjct:    2 VKMVIVVRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKANSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_SULIN (Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pth PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.945e-20
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -3
Query:  384 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 728
            +K+V+VVR D+KMG GK+A+Q AHAA  +   ++ S+    +  L +W Q GQPKIVV   +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++L+D +TG  +LL
Sbjct:    2 VKMVIVVRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKANSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_SULIM (Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pth PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.945e-20
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -3
Query:  384 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 728
            +K+V+VVR D+KMG GK+A+Q AHAA  +   ++ S+    +  L +W Q GQPKIVV   +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++L+D +TG  +LL
Sbjct:    2 VKMVIVVRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKANSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_SULIL (Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pth PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.945e-20
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -3
Query:  384 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 728
            +K+V+VVR D+KMG GK+A+Q AHAA  +   ++ S+    +  L +W Q GQPKIVV   +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++L+D +TG  +LL
Sbjct:    2 VKMVIVVRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKANSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_SULIK (Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pth PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.945e-20
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -3
Query:  384 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 728
            +K+V+VVR D+KMG GK+A+Q AHAA  +   ++ S+    +  L +W Q GQPKIVV   +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++L+D +TG  +LL
Sbjct:    2 VKMVIVVRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKANSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_SULIA (Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (strain M.16.27) GN=pth PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.945e-20
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -3
Query:  384 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSD----RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 728
            +K+V+VVR D+KMG GK+A+Q AHAA  +   ++ S+    +  L +W Q GQPKIVV   +  E+    + AE   LP  ++ DAG+TQ+  G+ T L IGP P++L+D +TG  +LL
Sbjct:    2 VKMVIVVRSDIKMGKGKMAAQVAHAAVTLVISIINSNNSRWKEWLNEWLQQGQPKIVVKANSLDEIILRSKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLIDPITGDLKLL 120          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH2_DICDI (Probable peptidyl-tRNA hydrolase 2 OS=Dictyostelium discoideum GN=pth2 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.152e-20
Identity = 48/115 (41.74%), Postives = 73/115 (63.48%), Query Frame = -3
Query:  387 DLKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 731
            D K VLV+R DL M  GKI +QC HA+ G   + ++  + +LR+WE  G  KI +   +++E+  L   A+  G+ +++V D+G TQ+ +GS TVLA+GP PK  VD+VT   +L
Sbjct:   95 DCKQVLVIRTDLGMTKGKIIAQCCHASLGARQKALKDSKKVLRQWENFGCAKITLKANSKEELVDLRNKAKELGVVSYLVLDSGHTQIPSGSATVLAVGPAPKEAVDAVTKHLKL 209          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_PYRKO (Peptidyl-tRNA hydrolase OS=Pyrococcus kodakaraensis GN=pth PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.788e-20
Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = -3
Query:  384 KLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 725
            K V+V R+DLK+  GK A Q AH A     +  +      + W   GQ K+VV  +N +E+ KL   AE  GLPT ++ DAG T++  G+ TVLAIGPGP+ +VD VTG  +LL
Sbjct:    5 KQVIVARKDLKLSKGKFAVQVAHGAVTAAIKAQKEKPEWFKAWFHEGQKKVVVKAENLEELFKLKAEAEKLGLPTALIKDAGLTEIPPGTVTVLAIGPGPEEVVDKVTGHLKLL 118          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_PYRHO (Peptidyl-tRNA hydrolase OS=Pyrococcus horikoshii GN=pth PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.148e-19
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -3
Query:  384 KLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 725
            K V+V R DLK+  GK+A+Q AH A     E  +  R     W + GQ K+VV  ++++E+ KL   AE  GLP  ++ DAG T++  G+ TVLA+GP P+ +VD VTG  +LL
Sbjct:    8 KQVIVARADLKLSKGKLAAQVAHGAVTAAFEAYKKKREWFEAWFREGQKKVVVKVESEEELFKLKAEAEKLGLPNALIRDAGLTEIPPGTVTVLAVGPAPEEIVDKVTGNLKLL 121          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_PYRAB (Peptidyl-tRNA hydrolase OS=Pyrococcus abyssi GN=pth PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.148e-19
Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = -3
Query:  384 KLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 725
            K V+VVR+DLK+  GK+A Q AH A     +  +  R    KW   GQ K+VV  ++  E+ KL   AE   LPT ++ DAG T++  G+ TVLAIGPGP  ++D VTG  +LL
Sbjct:    8 KQVIVVRKDLKLSKGKLAVQVAHGAVTAAFKAYKEKREWFEKWFHEGQKKVVVKVESLDELFKLKAEAEKLNLPTALIQDAGLTEIPPGTITVLAIGPGPSEIIDKVTGHLKLL 121          
The following BLAST results are available for this feature:
BLAST of CX078571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PTH_SULIY3.945e-2042.86Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (... [more]
PTH_SULIN3.945e-2042.86Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (... [more]
PTH_SULIM3.945e-2042.86Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (... [more]
PTH_SULIL3.945e-2042.86Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (... [more]
PTH_SULIK3.945e-2042.86Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (... [more]
PTH_SULIA3.945e-2042.86Peptidyl-tRNA hydrolase OS=Sulfolobus islandicus (... [more]
PTH2_DICDI5.152e-2041.74Probable peptidyl-tRNA hydrolase 2 OS=Dictyosteliu... [more]
PTH_PYRKO8.788e-2044.74Peptidyl-tRNA hydrolase OS=Pyrococcus kodakaraensi... [more]
PTH_PYRHO1.148e-1942.98Peptidyl-tRNA hydrolase OS=Pyrococcus horikoshii G... [more]
PTH_PYRAB1.148e-1944.74Peptidyl-tRNA hydrolase OS=Pyrococcus abyssi GN=pt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_9H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H04-O7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078571 ID=CX078571; Name=CX078571; organism=Citrus sinensis; type=EST; length=901bp
TTTTTTTTTGCAGGTGAAACCTTACACTTAATACATACAAATGGCAGCTA
TGTTAAGTGAGATTCAGCTATCATCTTTCCTATATTCCTATTCCAAAACT
AATCTGATCAAGGAAGGGTTACAGTCTTCTGTGCCATCTAAGGTAACATC
AAATTGAAATAACCAACTATCCTCCAGATGAAAATTGCAGAAATTCCAGC
AACTGCTTGCACCTGCCTTGAGTACTGGCCAACTCAAGGGAAAGAAGCCT
TTTCCACCAGAATATGACAGCTGCCTGGCAAATGAAACCAAGAGTCAAGA
AGATTTTGTTGGTAATCTTGATCTTTTAACATTGTCGTCTGGGAAATTTT
AAGCAAAAAGTCCTCCATTCTTAAGCATAACTAGAGCAGGCGCTGTTTCC
CTGTCACAGAATCCACCAAAGATTTGGGTCCAGGTCCGATGGCAAGAACC
GTCTTCGACCCAGCTGAAACCTGTGTCCGTCCAGCATCCGCAACAACAAA
AGTTGGAAGGCCTGTGTTTTCGGCTACTTCCCACAGCTTATTCATTTCTT
GTTGATTCTTGCACGTAACAACTATCTTGGGCTGCCCACATTGCTCCCAT
TTTCTCAGAAGGTGCCGGTCACTTTGCATTAGTTCTGCATACATCCCAGT
GGCTGCATGGGCACATTGTGATGCAATCTTTCCACTCCCCATCTTCAGGT
CTTGCCTAACCACCAAAACCAATTTGAGGTCTTGGTCACCGTCACTTGAG
ACAGAAACTTGTTCTTGTGGTTTCCTCGGTAAGAAATTTTTCTTTTTCAC
ATAATTCTTACCTGGCTTTGATAAATCTAATAACATCCCAAAAATGAAAC
CAATTACAAGGCCTGGGATGAAATTCTCTGGCCTAAAACTCACTGCTAAC
G
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