CX078571

Overview
NameCX078571
Unique NameCX078571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH2_YEAST (Peptidyl-tRNA hydrolase 2 OS=Saccharomyces cerevisiae GN=PTH2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.148e-19
Identity = 47/121 (38.84%), Postives = 76/121 (62.81%), Query Frame = -3
Query:  387 DLKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRH------LLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 731
            ++++ LV+RQDL M  GKIA+QC HAA   +  +  +         + ++W   GQ KI + C ++  M++L+  A + G+   V+ DAGRTQ++AGS TVL +GP PK+++D +TG  +L
Sbjct:   93 EVRMALVIRQDLGMTKGKIAAQCCHAALSCFRHIATNPARASYNPIMTQRWLNAGQAKITLKCPDKFTMDELYAKAISLGVNAAVIHDAGRTQIAAGSATVLGLGPAPKAVLDQITGDLKL 213          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_HALSA (Peptidyl-tRNA hydrolase OS=Halobacterium salinarium GN=pth PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.716e-19
Identity = 47/110 (42.73%), Postives = 71/110 (64.55%), Query Frame = -3
Query:  399 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTG 728
            +K V+  R D+ MG GK+A+Q AHA+   Y     +D   +R+W+  GQ K+VV   +++E+ +  E A+  GLPT +++DAGRTQ+  G+ T LAIGP P + VD +TG
Sbjct:    1 MKQVIAARTDIGMGQGKLAAQVAHASLNAYE---YTDDRAVRRWKDEGQTKVVVKVGSERELYERSEEAKRAGLPTGLISDAGRTQLEPGTPTALAIGPAPDADVDQITG 107          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_HALS3 (Peptidyl-tRNA hydrolase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=pth PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.716e-19
Identity = 47/110 (42.73%), Postives = 71/110 (64.55%), Query Frame = -3
Query:  399 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTG 728
            +K V+  R D+ MG GK+A+Q AHA+   Y     +D   +R+W+  GQ K+VV   +++E+ +  E A+  GLPT +++DAGRTQ+  G+ T LAIGP P + VD +TG
Sbjct:    1 MKQVIAARTDIGMGQGKLAAQVAHASLNAYE---YTDDRAVRRWKDEGQTKVVVKVGSERELYERSEEAKRAGLPTGLISDAGRTQLEPGTPTALAIGPAPDADVDQITG 107          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_METKA (Peptidyl-tRNA hydrolase OS=Methanopyrus kandleri GN=pth PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.269e-18
Identity = 49/114 (42.98%), Postives = 75/114 (65.79%), Query Frame = -3
Query:  384 KLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 725
            K V+VVR DLK+  GK+A+Q AHA+ G +    +S   +  +W + GQ K+V+ CK+++E+ +L E+A+  GLP+F+V DAG T++  G+ T L IGP  +  +D VTG   LL
Sbjct:    3 KQVIVVRGDLKLSRGKLAAQVAHASLGAFLRAKESGAPV-EEWLREGQKKVVLKCKDKEELLELHELAKRRGLPSFLVRDAGLTELEPGTVTCLGIGPEREEEIDRVTGDLPLL 115          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_CALMQ (Peptidyl-tRNA hydrolase OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=pth PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.269e-18
Identity = 49/116 (42.24%), Postives = 72/116 (62.07%), Query Frame = -3
Query:  384 DLKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 731
            + K  +VVR DL+M  GK+A Q AHAA     E +++    +  W   GQ KIV+   + +++ +L   AE+ GLPT ++ DAG T++  G+ T LAIGPGP+ LV+ VTG  +LL
Sbjct:    3 EFKQSIVVRGDLRMSRGKLAVQVAHAAVSAVLEALRNRGDWVNAWVSGGQKKIVLVVDSVEDLIRLKAKAESLGLPTALIEDAGLTELPPGTVTALAIGPGPEELVNKVTGSLKLL 118          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_THEON (Peptidyl-tRNA hydrolase OS=Thermococcus onnurineus (strain NA1) GN=pth PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.657e-18
Identity = 46/114 (40.35%), Postives = 71/114 (62.28%), Query Frame = -3
Query:  384 KLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 725
            K V+V+R+DLK+  GK+A Q AH A     ++ +      + W   GQ K+VV  +N++E+ +L   AE  G+PT ++ DAG T++  G+ T LA+GP P+ LVD VTG  +L+
Sbjct:    5 KQVMVIRKDLKLSKGKMAVQVAHGAVTAALKVQKEKPEWFKAWFHEGQKKVVVKAENERELFELKAHAEKLGIPTALIRDAGLTEIPPGTITCLAVGPAPEELVDKVTGHLKLV 118          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_METTH (Peptidyl-tRNA hydrolase OS=Methanobacterium thermoautotrophicum GN=pth PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.657e-18
Identity = 44/115 (38.26%), Postives = 71/115 (61.74%), Query Frame = -3
Query:  384 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 728
            +K V++VR DLKMG GKIA+Q  HA+ G +    +++   +RKWE  G  K++V+  +  E+ +++   +  G+  ++V DAG TQ+ AG+ T L IGP     +D +TG  +LL
Sbjct:    1 MKQVIIVRSDLKMGKGKIAAQACHASIGSFK---RTEEDKIRKWELEGSKKVIVSVNSLDELLEIYRAVKEAGISNYLVRDAGHTQIPAGTITCLGIGPDDDEKIDKITGDLKLL 112          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH2_CAEEL (Probable peptidyl-tRNA hydrolase 2 OS=Caenorhabditis elegans GN=C24G6.8 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.692e-18
Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = -3
Query:  384 QEQVSVSSDGDQDLKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSD--RHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 767
            +E  +V S   +  K+VLV    LKMG+GKIA+Q  HA  G+Y + M S+  ++ +  W + GQ KIVV  ++ +++  L +VA++ G   ++V DAG TQ+ AGS+TVL I  G    VDSVTG  +LL
Sbjct:  188 EEMGAVQSVAGRTHKMVLVANMSLKMGTGKIAAQVGHATLGVYRQAMNSENGQNAIAAWTRHGQVKIVVKGQSTEQLMDLCKVAKDAGCYYYLVQDAGYTQIPAGSRTVLGIF-GTVEQVDSVTGGLKLL 316          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_HALMA (Peptidyl-tRNA hydrolase OS=Haloarcula marismortui GN=pth PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.403e-17
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = -3
Query:  399 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTG 728
            +K  +V R D+ MG GK+A+Q AHA+   Y +     R   + W+  GQ K+V+   ++ E+ +L +VAE  GLP  VV DAG TQ+  G+ T LA+GP    LVD VTG
Sbjct:    1 MKQAIVARADIGMGEGKLAAQVAHASLSAYEDAGPKPR---KAWKGAGQKKVVLKATSESELFELADVAEREGLPHAVVRDAGHTQLDPGTVTALAVGPAEDELVDRVTG 107          
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_THESM (Peptidyl-tRNA hydrolase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=pth PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.963e-17
Identity = 43/114 (37.72%), Postives = 69/114 (60.53%), Query Frame = -3
Query:  384 KLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 725
            K V++VR DLK+  GK+A Q AH A     +  +      + W   GQ K+VV  ++++E+ +L   AE  G+P  ++ DAG T++  G+ T LAIGPGP+ +V+ +TG  +L+
Sbjct:    5 KQVMIVRSDLKLSKGKLAVQVAHGAVTAAFKAYKEKPEWFKGWFNEGQKKVVVKAESERELFELKAEAEKLGIPNSLIRDAGLTEIPPGTITCLAIGPGPEEIVNKITGNLKLV 118          
The following BLAST results are available for this feature:
BLAST of CX078571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PTH2_YEAST1.148e-1938.84Peptidyl-tRNA hydrolase 2 OS=Saccharomyces cerevis... [more]
PTH_HALSA9.716e-1942.73Peptidyl-tRNA hydrolase OS=Halobacterium salinariu... [more]
PTH_HALS39.716e-1942.73Peptidyl-tRNA hydrolase OS=Halobacterium salinarum... [more]
PTH_METKA1.269e-1842.98Peptidyl-tRNA hydrolase OS=Methanopyrus kandleri G... [more]
PTH_CALMQ1.269e-1842.24Peptidyl-tRNA hydrolase OS=Caldivirga maquilingens... [more]
PTH_THEON1.657e-1840.35Peptidyl-tRNA hydrolase OS=Thermococcus onnurineus... [more]
PTH_METTH1.657e-1838.26Peptidyl-tRNA hydrolase OS=Methanobacterium thermo... [more]
PTH2_CAEEL3.692e-1842.31Probable peptidyl-tRNA hydrolase 2 OS=Caenorhabdit... [more]
PTH_HALMA1.403e-1742.73Peptidyl-tRNA hydrolase OS=Haloarcula marismortui ... [more]
PTH_THESM6.963e-1737.72Peptidyl-tRNA hydrolase OS=Thermococcus sibiricus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_9H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H04-O7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078571 ID=CX078571; Name=CX078571; organism=Citrus sinensis; type=EST; length=901bp
TTTTTTTTTGCAGGTGAAACCTTACACTTAATACATACAAATGGCAGCTA
TGTTAAGTGAGATTCAGCTATCATCTTTCCTATATTCCTATTCCAAAACT
AATCTGATCAAGGAAGGGTTACAGTCTTCTGTGCCATCTAAGGTAACATC
AAATTGAAATAACCAACTATCCTCCAGATGAAAATTGCAGAAATTCCAGC
AACTGCTTGCACCTGCCTTGAGTACTGGCCAACTCAAGGGAAAGAAGCCT
TTTCCACCAGAATATGACAGCTGCCTGGCAAATGAAACCAAGAGTCAAGA
AGATTTTGTTGGTAATCTTGATCTTTTAACATTGTCGTCTGGGAAATTTT
AAGCAAAAAGTCCTCCATTCTTAAGCATAACTAGAGCAGGCGCTGTTTCC
CTGTCACAGAATCCACCAAAGATTTGGGTCCAGGTCCGATGGCAAGAACC
GTCTTCGACCCAGCTGAAACCTGTGTCCGTCCAGCATCCGCAACAACAAA
AGTTGGAAGGCCTGTGTTTTCGGCTACTTCCCACAGCTTATTCATTTCTT
GTTGATTCTTGCACGTAACAACTATCTTGGGCTGCCCACATTGCTCCCAT
TTTCTCAGAAGGTGCCGGTCACTTTGCATTAGTTCTGCATACATCCCAGT
GGCTGCATGGGCACATTGTGATGCAATCTTTCCACTCCCCATCTTCAGGT
CTTGCCTAACCACCAAAACCAATTTGAGGTCTTGGTCACCGTCACTTGAG
ACAGAAACTTGTTCTTGTGGTTTCCTCGGTAAGAAATTTTTCTTTTTCAC
ATAATTCTTACCTGGCTTTGATAAATCTAATAACATCCCAAAAATGAAAC
CAATTACAAGGCCTGGGATGAAATTCTCTGGCCTAAAACTCACTGCTAAC
G
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