CX078571

Overview
NameCX078571
Unique NameCX078571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX078571 vs. ExPASy Swiss-Prot
Match: PTH_NANEQ (Peptidyl-tRNA hydrolase OS=Nanoarchaeum equitans GN=pth PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11
Identity = 35/114 (30.70%), Postives = 67/114 (58.77%), Query Frame = -3 
Query:  387 LKLVLVVRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 728
            +K V+V R+ L +G GK+ +Q AHA+     ++ ++++ L  +W + G  K+V+   + +E+  + + A   G+   ++ DAG+TQVS G+   +A+GP     +D +TG  +L
Sbjct:    2 VKQVIVCRK-LDIGKGKLCAQVAHASLDAALKVYRNNKELFDRWYREGAKKVVLKVNSLEELLDIAKKAMEKGIVVSIIRDAGKTQVSPGTIICIALGPDEDEKIDQITGNLKL 114
The following BLAST results are available for this feature:
BLAST of CX078571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PTH_NANEQ2.563e-1130.70Peptidyl-tRNA hydrolase OS=Nanoarchaeum equitans G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_9H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9H04-O7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078571 ID=CX078571; Name=CX078571; organism=Citrus sinensis; type=EST; length=901bp
TTTTTTTTTGCAGGTGAAACCTTACACTTAATACATACAAATGGCAGCTA
TGTTAAGTGAGATTCAGCTATCATCTTTCCTATATTCCTATTCCAAAACT
AATCTGATCAAGGAAGGGTTACAGTCTTCTGTGCCATCTAAGGTAACATC
AAATTGAAATAACCAACTATCCTCCAGATGAAAATTGCAGAAATTCCAGC
AACTGCTTGCACCTGCCTTGAGTACTGGCCAACTCAAGGGAAAGAAGCCT
TTTCCACCAGAATATGACAGCTGCCTGGCAAATGAAACCAAGAGTCAAGA
AGATTTTGTTGGTAATCTTGATCTTTTAACATTGTCGTCTGGGAAATTTT
AAGCAAAAAGTCCTCCATTCTTAAGCATAACTAGAGCAGGCGCTGTTTCC
CTGTCACAGAATCCACCAAAGATTTGGGTCCAGGTCCGATGGCAAGAACC
GTCTTCGACCCAGCTGAAACCTGTGTCCGTCCAGCATCCGCAACAACAAA
AGTTGGAAGGCCTGTGTTTTCGGCTACTTCCCACAGCTTATTCATTTCTT
GTTGATTCTTGCACGTAACAACTATCTTGGGCTGCCCACATTGCTCCCAT
TTTCTCAGAAGGTGCCGGTCACTTTGCATTAGTTCTGCATACATCCCAGT
GGCTGCATGGGCACATTGTGATGCAATCTTTCCACTCCCCATCTTCAGGT
CTTGCCTAACCACCAAAACCAATTTGAGGTCTTGGTCACCGTCACTTGAG
ACAGAAACTTGTTCTTGTGGTTTCCTCGGTAAGAAATTTTTCTTTTTCAC
ATAATTCTTACCTGGCTTTGATAAATCTAATAACATCCCAAAAATGAAAC
CAATTACAAGGCCTGGGATGAAATTCTCTGGCCTAAAACTCACTGCTAAC
G
back to top