EY702433

Overview
NameEY702433
Unique NameEY702433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702433_ssr105 microsatellite EY702433_ssr105:105..119. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9982 contig Csv1_Contig9982:1..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702433 vs. ExPASy Swiss-Prot
Match: TCMO_PEA (Trans-cinnamate 4-monooxygenase OS=Pisum sativum GN=CYP73A9 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 38/145 (26.21%), Postives = 76/145 (52.41%), Query Frame = 2
Query:  173 ELPHQSLWKLSKKYGPVMHLKLGRIPYVVVSSAETAREVLKVHDLECCGKARLTGVGKLSYNYLDVAFAPYGDHWRQMRKLCVMELFSHKRVQSFQFIREEE-VXXXXXXXXXXXXXXXPVDLSQKIFALSGSILFRVAFGKRFQ 604
            +L H++L  L+K++  ++ L++ +   VV+SS E A+EVL    +E   + R       +    D+ F  YG+HWR+MR++  +  F++K VQ ++F  E E                  + + +++  +  +I++R+ F +RF+
Sbjct:   52 DLNHRNLTDLAKRFAEILLLRMEQRNLVVISSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDIVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRFGWESEAASVVDDVKKNSKASVNGIVIRRRLQLMMYNIMYRIMFDRRFE 196          
BLAST of EY702433 vs. ExPASy Swiss-Prot
Match: TCMO_SOYBN (Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  173 ELPHQSLWKLSKKYGPVMHLKLGRIPYVVVSSAETAREVLKVHDLECCGKARLTGVGKLSYNYLDVAFAPYGDHWRQMRKLCVMELFSHKRVQSFQFIREEE 478
            +L H++L  L+KK+G +  L++G+   VVVSS E A+EVL    +E   + R       +    D+ F  YG+HWR+MR++  +  F++K VQ ++   E E
Sbjct:   52 DLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWESE 153          
BLAST of EY702433 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 41/145 (28.28%), Postives = 74/145 (51.03%), Query Frame = 2
Query:  173 ELPHQSLWKLSKKYGPVMHLKLGRIPYVVVSSAETAREVLKVHDLECCGKARLTGVGKLSYNYLDVAFAPYGDHWRQMRKLCVMELFSHKRVQSFQFIREEEVXXXXXXXXXXXXXXXP-VDLSQKIFALSGSILFRVAFGKRFQ 604
            +L H++L  L+KK+G +  L++G+   VVVSS   A+EVL    +E   + R       +    D+ F  YG+HWR+MR++  +  F++K VQ ++   E E                  V + +++  +  + +FR+ F +RF+
Sbjct:   52 DLNHRNLTDLAKKFGEIFLLRMGQRNLVVVSSPNLAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRTGWEAEAAAVVDDVKKNPKAATEGVVIRKRLQLMMYNNMFRIMFDRRFE 196          
The following BLAST results are available for this feature:
BLAST of EY702433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
TCMO_PEA4.276e-1126.21Trans-cinnamate 4-monooxygenase OS=Pisum sativum G... [more]
TCMO_SOYBN5.585e-1135.29Trans-cinnamate 4-monooxygenase OS=Glycine max GN=... [more]
TCMO_ZINEL7.294e-1128.28Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-H07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702433 ID=EY702433; Name=EY702433; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGGCACAATAACCATGACCATGATCACGTGGCTCCCTCTTC
TCCTGATTCCTCTACTACTTATCCTCAAAAACATGAAGAAAAGCCAAAAG
CAGAAGCAGCAGCAGCAGCTTCCACCGGGGCCTCCTATGCTCCCAATACT
TGGCAATTTACTCCAACTTGGAGAACTGCCTCACCAATCTTTATGGAAAC
TGTCCAAAAAGTACGGCCCAGTTATGCACCTCAAACTTGGTCGTATACCC
TATGTTGTAGTCTCCTCTGCAGAGACAGCAAGAGAGGTCTTGAAAGTTCA
TGATCTTGAGTGCTGCGGCAAAGCGCGATTAACCGGCGTCGGGAAGCTTT
CGTATAACTATTTGGATGTTGCGTTTGCCCCATATGGTGATCACTGGAGA
CAGATGCGCAAGTTATGTGTTATGGAGCTTTTCAGCCACAAGAGGGTGCA
GTCATTTCAGTTCATCAGGGAAGAAGAAGTTGCCTCACTTGTGAATTCCA
TCTCTCGAGCATCATCTTCTGCTAGTCCTGTTGATCTTTCTCAGAAGATA
TTTGCTCTGTCTGGGAGCATACTATTTAGAGTGGCTTTCGGAAAGAGATT
TCAAGGGAGTCATTTTGATAACCATAAATTTCATGAATTGCTCGCGGCTG
CTATGGCTGTGGGAGGGAGCTTCACATCAGAGGAAATGTTTCCGTATGNT
GGTTGGATCATTGACAGGTTCTCTGGTTATCAAGCGAAGATCGAGAGCGT
TTTCCANGAAAGTGGGGATCTTCTTTTGGACAGTAATCGAAGATCATCTT
TAAGCTGNAGGGACAAACAACAGCATGAAGACATCGTCGATGTCATGCTG
CGAATTAGAAGGGAACAAGCTCATCTGCCCACGNAGAA
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