EY702426 | Citrus Genome Database

Overview


Name	EY702426
Unique Name	EY702426
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	803

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6283	contig	Csv1_Contig6283:133..935.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_DAUCA (Photosystem II reaction center protein K OS=Daucus carota GN=psbK PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.208e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL+ ICLNSA YSSS  FAKLPEAYAFLNPIVD+MPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSAFYSSSLFFAKLPEAYAFLNPIVDLMPVIPLFFFLLAFVWQAAVSFR 61

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_SOLTU (Photosystem II reaction center protein K OS=Solanum tuberosum GN=psbK PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.061e-22
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLN FSL+ ICLNS LYSSSF F KLPEAYAFLNPIVD+MPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_SOLLC (Photosystem II reaction center protein K OS=Solanum lycopersicum GN=psbK PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.061e-22
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLN FSL+ ICLNS LYSSSF F KLPEAYAFLNPIVD+MPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_SOLBU (Photosystem II reaction center protein K OS=Solanum bulbocastanum GN=psbK PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.061e-22
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLN FSL+ ICLNS LYSSSF F KLPEAYAFLNPIVD+MPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_DRIGR (Photosystem II reaction center protein K OS=Drimys granadensis GN=psbK PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.061e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL+ ICLNSAL+SSSF FAKLPEAYAF NPIVD MPVIP LFFLLA VWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALHSSSFFFAKLPEAYAFFNPIVDFMPVIPVLFFLLALVWQAAVSFR 61

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_ATRBE (Photosystem II reaction center protein K OS=Atropa belladonna GN=psbK PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.061e-22
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLN FSL+ ICLNS LYSSSF F KLPEAYAFLNPIVD+MPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLYSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_EUCGG (Photosystem II reaction center protein K OS=Eucalyptus globulus subsp. globulus GN=psbK PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.692e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL+ ICL+S LYSSSF  AKLPEAYAFLNPIVD MPVIP LFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLHSTLYSSSFFLAKLPEAYAFLNPIVDFMPVIPLLFFLLAFVWQAAVSFR 61

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_TOBAC (Photosystem II reaction center protein K OS=Nicotiana tabacum GN=psbK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.996e-22
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLN FSL+ ICLNS L+SSSF F KLPEAYAFLNPIVD+MPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLFSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_SOYBN (Photosystem II reaction center protein K OS=Glycine max GN=psbK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.996e-22
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIF+L+ IC++S LYSSSF  AKLPEAYAFLNPIVD+MPVIP LFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLVCICIHSVLYSSSFFSAKLPEAYAFLNPIVDIMPVIPLLFFLLAFVWQAAVSFR 61

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_POPAL (Photosystem II reaction center protein K OS=Populus alba GN=psbK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.996e-22
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNI +L+ ICLN ALYSSSF F KLPEAYAFLNPIVDVMPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNILNLICICLNFALYSSSFFFTKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61

The following BLAST results are available for this feature:

BLAST of EY702426 vs. ExPASy Swiss-Prot

BLAST of EY702426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59


Match Name	E-value	Identity	Description
PSBK_DAUCA	1.208e-22	86.89	Photosystem II reaction center protein K OS=Daucus...	[more]
PSBK_SOLTU	2.061e-22	85.25	Photosystem II reaction center protein K OS=Solanu...	[more]
PSBK_SOLLC	2.061e-22	85.25	Photosystem II reaction center protein K OS=Solanu...	[more]
PSBK_SOLBU	2.061e-22	85.25	Photosystem II reaction center protein K OS=Solanu...	[more]
PSBK_DRIGR	2.061e-22	86.89	Photosystem II reaction center protein K OS=Drimys...	[more]
PSBK_ATRBE	2.061e-22	85.25	Photosystem II reaction center protein K OS=Atropa...	[more]
PSBK_EUCGG	2.692e-22	86.89	Photosystem II reaction center protein K OS=Eucaly...	[more]
PSBK_TOBAC	5.996e-22	83.61	Photosystem II reaction center protein K OS=Nicoti...	[more]
PSBK_SOYBN	5.996e-22	83.61	Photosystem II reaction center protein K OS=Glycin...	[more]
PSBK_POPAL	5.996e-22	85.25	Photosystem II reaction center protein K OS=Populu...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-006-G12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702426 ID=EY702426; Name=EY702426; organism=Citrus sinensis; type=EST; length=803bp
TTTTCCTCGACCCCGCGTCCGGAATTCAATTTACAATTGTATGAAAGTAT
GATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTTGTTTTGATTGGG
TCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCTTTTCTTCATTTT
TATCTTATATCAATAAGATATTAATAACTCAATCAAAATAAAATTATCTC
CAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTTAATGTATATCT
GTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCGCTAAATTACCC
GAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATGCCAGTAATACC
TGGTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTC
GATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATTTATTCTAGTTC
GAAAAAAAAAAAATTCTAACAATTACTTACATAAGAGCAGATGAGTGTTA
CAATATGAACGAACCCCCGCCTCAATTCAAACATTCAAACAATGAAATTC
TTGGGGAACCGAGATCCATTTTGATCCCCCATTTGCTATTTGCCATTTTG
ACCCTTCTTTCCTGAAACCATCTTATATTAGAGCCAACCAAAACGTAGAA
TTCTAACTGGGTGAATTTAATTGATGAACACCAGTTTCTATTTAAAGATT
CAATTCTCAAAAGAACTTCCTTTCCTGACTGTCAAATTGGATATGTACTA
TAAAAATAAAGACTCATTCTCTTTCTCCTTTTCCCCAAAACCTGCATTTG
GGA